Input parameters:

  Query = ENSDARP00000105980 (Len=534)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000105980, Len=534):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGVAQSGEGAAGQEAEADGEPPHEALVQGALEEEEEPAAKQPRLQQEDVALDFPMIEIAHEPSEEKSKSQDAAGVEEEV 80  
WD40-rpts      (_________________WD 1_________________)  (_________________WD 2________________

Query       81 SYHQTDEPVHVAEHAEMERDNEWHQNGAESREMLEQTEENTADEPEKNSPEAEQHYQGLDFRQNPQMLTGSWAEYTHSAE 160 
WD40-rpts      )   (__________________WD 3__________________)                       (__________

Query      161 NYLRGCKWAPDGSCIVSNSADNVLRVYNLPAELYSSQWDLLSEMSPVLKMAEGDTIYDYCWFPKMTSTDPDTCFIASSSR 240 
WD40-rpts      _______WD 4________________)                      (________________WD 5_________

Query      241 DNPVHIWDAFYGDLRASFRPYNHLDELTAAHSLCFSPDGSQLYCGFDKIVRVFHTDRPGRDCEQRPTMVKKRGQTGIISC 320 
WD40-rpts      _______)   (___________________WD 6__________________)          (_______________

Query      321 IAFSQCHSMYACGSYSRSVGLYSCDDGSLLALLPTRHHGGLTHLLFSPNGYHLYTGGRKDSEILCWDLRDPGQVLFSMQR 400 
WD40-rpts      __WD 7________________)   (__________________WD 8_________________)    (________

Query      401 NVNTNQRIYFDLDQSGRYLLSGDTDGVVSVWDTLTALPDGNEEILKPLLQFQAHTDCTNGISVHPFMPLMASSSGQRKFF 480 
WD40-rpts      __________WD 9_________________)            (________________WD10_______________

Query      481 WPSDSEDSTSDSEEGNVMPTNGDRPDNALVLWWAGPVASTNEIRQEEEPAVIDS 534 
WD40-rpts      _)(_____________WD11____________)                     

11 WD40-repeats found in QUERY=ENSDARP00000105980 (Len=534):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40       8.95  484.22  1.9e-05       12.5%     32.05
  WD 2:  Seg  4    43-81       6.75  393.62  0.00031        7.5%     37.66
  WD 3:  Seg  7    85-126      4.48  299.55  0.00571       10.0%      5.79
  WD 4:  Seg  9   150-188      8.73  475.33  2.4e-05       22.5%     53.27
  WD 5:  Seg 14   211-248      8.13  450.49  5.3e-05       22.5%     40.23
  WD 6:  Seg 18   252-294      6.43  380.28  0.00047       27.5%     53.99
  WD 7:  Seg 22   305-343      8.03  446.55  6.0e-05       15.0%     55.77
  WD 8:  Seg 26   347-387      7.50  424.44  0.00012       40.0%     53.06
  WD 9:  Seg 30   392-432      8.31  457.91  4.2e-05       32.5%     53.96
  WD10:  Seg 34   445-482      6.27  373.84  0.00057       20.0%     46.34
  WD11:  Seg 38   483-513      3.34  252.65  0.02425       15.0%     34.95

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-40     MSGVAQSG-EGAA-----GQEAEADGEPP--HEALV----QGA-L--EEEEEPAA
   WD 2   43-81     -PRLQQED-VALD-----FPMIEIAHEPS--EEKSK----SQD-A--AGVEEEVS
   WD 3   85-126    -TDEPVHV-AEHA-----EMERDNEWHQN--GAES-REMLEQT-E--ENTADEPE
   WD 4  150-188    -GSWAEYT-HSAE-----NYLRGCKWAPD--GSCIV----SNS-A--DNVLRVYN
   WD 5  211-248    --AEGDTI-YDYC-----WFPKMTSTDPD--TCFIA----SSS-R--DNPVHIWD
   WD 6  252-294    -GDLRASF-RPYNHLDELTAAHSLCFSPD--GSQLY----CGF----DKIVRVFH
   WD 7  305-343    -RPTMVKK-RGQT-----GIISCIAFSQC--HSMYA----CGS-Y--SRSVGLYS
   WD 8  347-387    -GSLLALLPTRHH-----GGLTHLLFSPN--GYHLY----TGGRK--DSEILCWD
   WD 9  392-432    -GQVLFSM-QRNV-----NTNQRIYFDLDQSGRYLL----SGD-T--DGVVSVWD
   WD10  445-482    -LKPLLQF-QAHT-----DCTNGISVHPF--MPLMA----SSS-G--QRKF-FWP
   WD11  483-513    ------------S-----DSEDSTSDSEE--GNVMP----TNG-DRPDNALVLWW

   WD40 Template    TGECLRTL-SGHT-----SGVTSVSFSPD--GKRLV----SGS-E--DGTIKVWD