Input parameters:

  Query = ENSDARP00000105938 (Len=416)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000105938, Len=416):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTLFDGRPIES 80  
WD40-rpts                                                            (________________________W

Query       81 LSLIDAVMPDVVQTRQQAYRDKLAQQQAAAAPSATSANMQGNAKNGENTANGEENGAHALPNNHADMMEVDGDVEIPQNK 160 
WD40-rpts      D 1________________________)(____________________WD 2___________________)    (__

Query      161 AMVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSSSSSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLA 240 
WD40-rpts      _______________WD 3________________)                 (_________________WD 4_____

Query      241 TGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT 320 
WD40-rpts      ___________)  (_________________WD 5________________)   (________________WD 6___

Query      321 FASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSP 400 
WD40-rpts      _____________)   (_________________WD 7________________)   (________________WD 8

Query      401 TGPGTNNPNANLMLAR 416 
WD40-rpts      _______________)

8 WD40-repeats found in QUERY=ENSDARP00000105938 (Len=416):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    55-108      3.10  242.89  0.03269        7.5%     18.07
  WD 2:  Seg  3   109-153      3.66  265.69  0.01624       10.0%     15.44
  WD 3:  Seg  6   158-196      9.40  503.09  1.0e-05       32.5%     46.58
  WD 4:  Seg 11   214-252      8.72  475.01  2.5e-05       25.0%     40.46
  WD 5:  Seg 14   255-293      9.69  514.79  7.2e-06       25.0%     52.73
  WD 6:  Seg 18   297-334      7.42  421.10  0.00013       22.5%     49.28
  WD 7:  Seg 22   338-376     10.40  544.36  2.9e-06       35.0%     55.70
  WD 8:  Seg 26   380-416      6.49  382.78  0.00043       15.0%     37.75

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   55-108    --------------KGLQYVEAEVSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAYRDKLAQQQA
   WD 2  109-153    AAAPSATSANMQGNAKNGENTANGEENGAHALPNNHADMMEVD----GD-------------------
   WD 3  158-196    -Q-----NKAMVLRGHESEVFICAWNPVSDLLASGSGDSTARI----WN-------------------
   WD 4  214-252    -I-----REGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARI----WT-------------------
   WD 5  255-293    -G-----NLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTII----WD-------------------
   WD 6  297-334    -G-----EAKQQFPFHSAPALDVDWQSNNT-FASCSTDMCIHV----CK-------------------
   WD 7  338-376    -D-----RPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKI----WS-------------------
   WD 8  380-416    -D-----TCVHDLQAHSKEIYTIKWSPTGPGTNNPNAN--LML----AR-------------------

   WD40 Template    TG-----ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKV----WD-------------------