Input parameters:

  Query = ENSDARP00000105810 (Len=1264)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000105810, Len=1264):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEERARSRLLRSKATLEQDIKASYLMDHMISDGVLTNDEKALIKSEYATRKEQAVALLETLLRKDNRAYISFYNALIRES 80  
WD40-rpts                                                                                      

Query       81 YGDLASLLHSDLPLLSPEGEKSFADGVSPSVQAILSVGGVPQRPVVFVSRPPLLNLIREMLYRLRDTPGWVTVFGMAGSG 160 
WD40-rpts                                                                                      

Query      161 KSVMAAEVVRDRSLIKECFPDGVHWLSVGQCERADLLVRMQSLCFRLEQCQSSDTSQRPPSTVEEAKERLRFLMLRRFPR 240 
WD40-rpts                                                                                      

Query      241 SLLILDDVWDSSSLRSFDIQCRVLLTTRNRALTDSVSGVRYEVPVENGLDEEKALEILALYVNGKMHKLPEQARSIVSEC 320 
WD40-rpts                                                                                      

Query      321 KGSPLVVSLIGALLREFPDRWSYYLRQLQQKQFKRIRKSSSYDYEALDQAMDASLQVLEAEHQELYRDLSVMQKDIKVPA 400 
WD40-rpts                                                                                      

Query      401 KVLSVLWGLELEEVEDVLQEFVNKSLLFRDCNQRPYRYYLHDLQLDFLAEQNRDQIAELHKKMVRQYQRFYSKRPPDSAD 480 
WD40-rpts                                                                                      

Query      481 KDSLYWYQFIPYHMAKAGLSKELYSLMFSLDWVKEKARIMGSAHLINDYVEYGEILDKENSEVRVQFQEFLSLNGHHLEQ 560 
WD40-rpts                                                                                      

Query      561 RPFPDVVQLALSQPDRSEVYRQALMQAQKRASRGQIYLNWVNKNIEEGLSRLVMHPHQGAVYYACFSKDGSKIASCGASK 640 
WD40-rpts                                                     (_________________WD 1___________

Query      641 ALRVFKSTSGEKLLELQAHEEDVLCCAFSPDDRHIATCASDKKVKLWNVERGVLIREFEVEHEEQINHCQFTNTGRRVLL 720 
WD40-rpts      _____)   (_________________WD 2________________)   (___________________WD 3_____

Query      721 ATCSNDKFTNTKLWNPNKKTSQNTMFGHMEPVNHCCFSPNDLYLATSSSDGSLKLFEVSSANEWKSIDVDSFFPESDEEI 800 
WD40-rpts      ______________)   (_________________WD 4________________)          (____________

Query      801 KAMVKCSTWSADGSQIICAARNTVFVFDVETSDLLLELKTSRLSTIQFCHACPNSSLLAVALSHYTVELWNFESSKKKAE 880 
WD40-rpts      ______WD 5_________________)(___________________WD 6__________________)   (_____

Query      881 CSGHLSWVHCVQFSPDGSLLLSSSDDQTIRLWETDRVHTSSAVALKRDTDVLFSHSDATIIAPDSSNRLQVLSGSTGAVV 960 
WD40-rpts      ____________WD 7________________)(_________________WD 8_________________)   (___

Query      961 LESEELSSRIRCSCISRNAAFVALGSEDGTVQVIEVPSSKASVKLSGHTKTVHHCQFTDDCEILITSSEDSTIRVVWKWR 1040
WD40-rpts      ______________WD 9________________)   (_________________WD10_________________)  

Query     1041 TGECMVLQGHMEPVRKFHLLSSSSSPRLFSWSFDGTVKVWDLTRGQMLQDLVCHEGAVLSCDVSSDGRLFATTSANRTAK 1120
WD40-rpts      (__________________WD11_________________)   (_________________WD12______________

Query     1121 KVWSSASWKMIFLLEGHKDCVRSCRFSWDNKRLATGDDNGEIRLWSMLDGALLKICSRDTKDSMDSYHGGWVTDLHFSPD 1200
WD40-rpts      ___)   (_________________WD13________________)           (________________WD14__

Query     1201 NRVLVSTGGYIKWWSVESGEALQTFYTMGGNLKKIHVSPDFSTFITVDSIGILYILKRLEGEGT 1264
WD40-rpts      ______________)   (_________________WD15________________)       

15 WD40-repeats found in QUERY=ENSDARP00000105810 (Len=1264):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   608-646      7.77  435.56  8.4e-05       22.5%     56.47
  WD 2:  Seg 16   650-688      9.39  502.59  1.0e-05       32.5%     57.83
  WD 3:  Seg 20   692-735      5.32  334.34  0.00194       27.5%     54.18
  WD 4:  Seg 24   739-777      9.14  492.36  1.4e-05       30.0%     54.56
  WD 5:  Seg 29   788-828      5.65  347.88  0.00128       17.5%     41.58
  WD 6:  Seg 32   829-871      7.07  406.91  0.00020       15.0%     56.61
  WD 7:  Seg 36   875-913      9.88  522.83  5.6e-06       45.0%     57.37
  WD 8:  Seg 40   914-953      6.61  387.50  0.00037       15.0%     47.14
  WD 9:  Seg 44   957-995      8.01  445.67  6.1e-05       25.0%     56.21
  WD10:  Seg 48   999-1038     8.10  449.45  5.4e-05       40.0%     54.78
  WD11:  Seg 52  1041-1081     7.35  418.18  0.00014       40.0%     55.10
  WD12:  Seg 56  1085-1124     7.76  435.08  8.5e-05       35.0%     56.26
  WD13:  Seg 60  1128-1166     9.59  510.93  8.1e-06       37.5%     58.41
  WD14:  Seg 65  1178-1215     6.98  403.03  0.00023       37.5%     37.39
  WD15:  Seg 68  1219-1257     7.45  422.31  0.00013       20.0%     54.88

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  608-646    -GL---SRLVMH-PHQGAVY--YACFSKDGSK--IASCGASK--AL-RV-FK
   WD 2  650-688    -GE---KLLELQ-AHEEDVL--CCAFSPDDRH--IATCASDK--KV-KL-WN
   WD 3  692-735    -GV---LIREFEVEHEEQIN--HCQFTNTGRRVLLATCSNDKFTNT-KL-WN
   WD 4  739-777    -KT---SQNTMF-GHMEPVN--HCCFSPNDLY--LATSSSDG--SL-KL-FE
   WD 5  788-828    DVD-SFFPESDE-EIKAMVK--CSTWSADGSQ--IICAARN---TV-FV-FD
   WD 6  829-871    VETSDLLLELKT-SRLSTIQ--FCHACPNSSL--LAVALSHY--TV-EL-WN
   WD 7  875-913    -SK---KKAECS-GHLSWVH--CVQFSPDGSL--LLSSSDDQ--TI-RL-WE
   WD 8  914-953    TDR---VHTSSA-VALKRDT--DVLFSHSDAT--IIAPDSSN--RL-QV-LS
   WD 9  957-995    -GA---VVLESE-ELSSRIR--CSCISRNAAF--VALGSEDG--TV-QV-IE
   WD10  999-1038   -SK---ASVKLS-GHTKTVH--HCQFTDDCEI--LITSSEDS--TI-RVVWK
   WD11 1041-1081   -TG---ECMVLQ-GHMEPVRKFHLLSSSSSPR--LFSWSFDG--TV-KV-WD
   WD12 1085-1124   -GQ---MLQDLV-CHEGAVL--SCDVSSDGRL--FATTSANR--TAKKV-WS
   WD13 1128-1166   -WK---MIFLLE-GHKDCVR--SCRFSWDNKR--LATGDDNG--EI-RL-WS
   WD14 1178-1215   RDT---KDSMDS-YHGGWVT--DLHFSPDNRV--LVSTG--G--YI-KW-WS
   WD15 1219-1257   -GE---ALQTFY-TMGGNLK--KIHVSPDFST--FITVDSIG--IL-YI-LK

   WD40 Template    TGE---CLRTLS-GHTSGVT--SVSFSPDGKR--LVSGSEDG--TI-KV-WD