Input parameters:

  Query = ENSDARP00000104388 (Len=1735)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000104388, Len=1735):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWPSGAGSRQPCPRESALRRAAISGNVLALPPFHVPTGRSVRVFICANPDDTEAERNALKEHVYPKLRDFCRENYGIEFQ 80  
WD40-rpts                                                                                      

Query       81 VVDLYWGIDPEEWDSPELQRLRMKLLEECLKTSAGPCFVGLIGEKYGSIRVPGEVESAEFEMILDAAVEAGLDTRILEEW 160 
WD40-rpts                                                                                      

Query      161 YCRDENSVPPAYYLKPKAEMLKNYQNSMESNTVAKSKNDKAWRAVSEEIKRIFRTSVLQLQEKGTMKSGQAKKFLCSALE 240 
WD40-rpts                                                                                      

Query      241 DELDFALGKQTPAFLKKCVCYIRKISNFDRFAKLPEMARYMDIVVSDDRVMRNQEAYERLLKVRDEFIPVVVAASNLRVY 320 
WD40-rpts                                                                                      

Query      321 SSVTHCDMKLGYSQEVESHYVEGLCKQFYEDMVDIIQATVQQNFDTETDPLYDEIIQHLSLCKTFSSFYVYKSEALDIVQ 400 
WD40-rpts                                                                                      

Query      401 EYLYPSKGGRITPQVVYGGPCTGKTLLLAEVAKQAYSWIQKEMGPETDPVVIVRFIGSTDFSTDLRTLLQSICEQIAINY 480 
WD40-rpts                                                                                      

Query      481 RCLIHFLPNKIQEMRELLVNLLGESSFHRPLVIILDALEQLSDADEARKLWWLPVHLPRTVRIVVSTLPNKHGILQKLRC 560 
WD40-rpts                                                                                      

Query      561 LIHDEEAYVELMQRDRKACSQTLKQQLLGVKRKVTSGQQIYVNEAMAKCTLPMFVNLIYREVVHWRSHKDVDDKSLCSTV 640 
WD40-rpts                                                                                      

Query      641 HESIEQLFYSVENKLGSRFVFRALGYITMARAGLTELELEDILSLDNSVLGDIMVSSNLKSPLRISYDFIARLKEELEGY 720 
WD40-rpts                                                                                      

Query      721 LVERQVHNVTLMVWANRHLHLIAQKLYLSNEEDVHQMHSLLAEYFLGAWAGGRKKIFHCDNNHFASLNISQHRNPHNQQS 800 
WD40-rpts                                                                                      

Query      801 LHGHDKASADKHSYDRQTPEQPWVFQCNLLEPDIFFVNHRKMTELTYHLTRSGRTDDLMYGVIMNFSWLYTMIKIGQFDK 880 
WD40-rpts                                                                                      

Query      881 ALSDIDLAYSYTQEKELKFLATTLRSIKLKVTKNPASLSAELQQRLLPVVTSLPKLRHLLLECDKDGPKYCSIVPLHSSM 960 
WD40-rpts                                                                                      

Query      961 DVTYSPERLPLSSSYMQIVETLPTLAPNIVIVALEDGSVSTWDVESRQLLRQIDTARSVVLGIRLTTDEKYLVVATTKNT 1040
WD40-rpts          (_________________WD 1________________)   (_________________WD 2____________

Query     1041 LLIYDNHKSCLLSEVEVKGSKHCGITGGVAFINGFTLSSHHALAWLEASKDVSVIDLLYGWPLYQFHCWYEVTCVQCSPD 1120
WD40-rpts      ____)       (___________________WD 3___________________)   (________________WD 4

Query     1121 GMYAFCGQYLNTTTIFHLGSGDKLATMTSEFSGGFVKSILILDTINQMVMIDNEGSLSVWSTKDITNPKLMEDYDCRGDD 1200
WD40-rpts      ________________)   (__________________WD 5_________________)(__________________

Query     1201 SEVVGIELSEDQRSILICKARSIEVLDTKIWKMAEKFKAKRTEKFVAAVLSKNSQSIIASMENTSSIFVWRRDSGQCMAS 1280
WD40-rpts      __WD 6____________________)   (__________________WD 7_________________)   (_____

Query     1281 LIEISGAIVKLIKSTHHNLLLSVASSGVLSVWDIDIITAMSNIDKTGKPIQILQLSGREDFVYTMDGSEVIHKWNYSTGF 1360
WD40-rpts      ____________WD 8________________)     (________________WD 9_______________)(____

Query     1361 IEMVFKHEGLVENCVLTTSGDLMVTSDDKSSQYIWHTTTGENIFRINGQKISQLLITHNDQFVVSLCEQNASRVWRLATG 1440
WD40-rpts      ______________WD10_________________)(_________________WD11_________________)(___

Query     1441 HKVCNILVTLQHALITTANTFLVGANKNKLLAVSLWSGSVSKKFICDDGITIVNFKLIPDSPDFVVFITSTETVFIWSVA 1520
WD40-rpts      _______________WD12_________________)(__________________WD13_________________)(_

Query     1521 DESVCRRVQLPNNFLKNLEDFQISPNGKLGIVSKGDENINVLDLHSGKLRLVHAAGIIWRQKLSRDGRYLVYICFRNCDE 1600
WD40-rpts      ___________________WD14___________________)(_________________WD15_______________

Query     1601 DDDAGVVSSLIVMRLADGKSIGTCSLYKTPTYLCLSQRALNIIVGFEDGSIGTYTVVDRVDAALKIKIATSNSRQIVNNA 1680
WD40-rpts      __)              (________________WD16________________)   (_________________WD17

Query     1681 SQKVRPKCSNNAFKTIADCVWRESTEVFSRDSPINVSDGGEPETTTPTKKTELLQ 1735
WD40-rpts      ________________)                                      

17 WD40-repeats found in QUERY=ENSDARP00000104388 (Len=1735):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15   965-1003     5.31  334.17  0.00195       17.5%     54.32
  WD 2:  Seg 19  1007-1045     7.84  438.31  7.7e-05       25.0%     54.47
  WD 3:  Seg 23  1053-1096     4.30  292.31  0.00714       20.0%     44.33
  WD 4:  Seg 27  1100-1137     6.13  368.08  0.00068       27.5%     54.42
  WD 5:  Seg 31  1141-1181     6.72  392.10  0.00032       27.5%     56.87
  WD 6:  Seg 35  1182-1227     5.46  340.00  0.00163       22.5%     41.86
  WD 7:  Seg 38  1231-1271     5.79  353.88  0.00106       15.0%     54.43
  WD 8:  Seg 42  1275-1313     8.39  461.19  3.8e-05       25.0%     55.49
  WD 9:  Seg 46  1319-1355     6.56  385.61  0.00040        7.5%     50.44
  WD10:  Seg 49  1356-1396     7.09  407.52  0.00020       12.5%     56.39
  WD11:  Seg 53  1397-1436     6.59  386.73  0.00038       15.0%     50.46
  WD12:  Seg 57  1437-1477     4.05  282.01  0.00982        7.5%     44.69
  WD13:  Seg 61  1478-1518     5.20  329.52  0.00225       12.5%     51.21
  WD14:  Seg 65  1519-1563     6.81  395.86  0.00029       20.0%     50.29
  WD15:  Seg 69  1564-1603     6.99  403.41  0.00023       17.5%     41.55
  WD16:  Seg 73  1618-1655     5.94  360.17  0.00087       25.0%     53.31
  WD17:  Seg 77  1659-1697     4.77  311.52  0.00394        2.5%     35.75

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  965-1003   -SP-----ERL-------PLSSSYMQ--IVETLPTL-----AP-NIVIVALEDG--SVSTWD
   WD 2 1007-1045   -RQ-----LLR-------QIDTARSV--VLGIRLTT-----DE-KYLVVATTKN--TLLIYD
   WD 3 1053-1096   -SE-----VEV-------KGSKHCGI--TGGVAFINGFTLSSH-HALAWLEASK--DVSVID
   WD 4 1100-1137   -GW-----PLY-------QFHCWYE---VTCVQCSP-----DG-MYAFCGQYLN--TTTIFH
   WD 5 1141-1181   -GD-----KLA-------TMTSEFSGGFVKSILILD-----TI-NQMVMIDNEG--SLSVWS
   WD 6 1182-1227   TKD-----ITNPKLMEDYDCRGDDSE--VVGIELSE-----DQ-RSILICK-AR--SIEVLD
   WD 7 1231-1271   -WK-----MAE-------KFKAKRTEKFVAAVLSKN-----SQ-SIIASMENTS--SIFVWR
   WD 8 1275-1313   -GQ-----CMA-------SLIEISGA--IVKLIKST-----HH-NLLLSVASSG--VLSVWD
   WD 9 1319-1355   --------AMS-------NIDKTGKP--IQILQLSG-----RE-DFVYTMDGSE--VIHKWN
   WD10 1356-1396   YST----GFIE-------MVFKHEGL--VENCVLTT-----SG-DLMVTSDDKS--SQYIWH
   WD11 1397-1436   TTT-----GEN-------IFRINGQK--ISQLLITH-----ND-QFVVSLCEQN--ASRVWR
   WD12 1437-1477   -LA-----TGH-------KVCNILVT--LQHALITT-----AN-TFLVGANKNKLLAVSLWS
   WD13 1478-1518   GSV-----SKK-------FICDDGIT--IVNFKLIP-----DSPDFVVFITSTE--TVFIWS
   WD14 1519-1563   VADESVCRRVQ-------LPNNFLKN--LEDFQISP-----NG-KLGIVSKGDE--NINVLD
   WD15 1564-1603   LHS-----GKL-------RLVHAAGI--IWRQKLSR-----DG-RYLVYICFRN--CDEDDD
   WD16 1618-1655   -GK-----SIG-------TCSLYKT---PTYLCLSQ-----RA-LNIIVGFEDG--SIGTYT
   WD17 1659-1697   -RV-----DAA-------LKIKIATS--NSRQIVNN-----AS-QKVRPKCSNN--AFKTIA

   WD40 Template    TGE-----CLR-------TLSGHTSG--VTSVSFSP-----DG-KRLVSGSEDG--TIKVWD