Input parameters:

  Query = ENSDARP00000104171 (Len=1250)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000104171, Len=1250):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLKEINRTAIQAWSPAQQHPIYLAAGTSAQQLDATFSTNASLEIFELDLADSALAMKSCGSFSSPHRYHKLVWGPHGIE 80  
WD40-rpts            (__________________WD 1_________________)(_________________________WD 2___

Query       81 NQGLPSGVLIAGGENGNIILYDASKIIAGDSEVIILQSEKHTGAVRALDVNSFQSNLVASGGNESEIYIWDLNNFSSPMT 160 
WD40-rpts      _____________________)              (_______________WD 3______________)(________

Query      161 PGPKTQPQEDISCVAWNKQVQHILASASPSGKASVWDLRKNDLIIKVSDHSNRMHCSGLAWNPEVATQLVLASEDDRMPV 240 
WD40-rpts      ____________WD 4____________________)   (____________________WD 5_______________

Query      241 IQMWDLRFATSPLKVLENHTRGILAIAWSVADPELLLSCGKDNRILCWNPNTAEVLYELPTSTQWCFDIQWCPRNPAVLS 320 
WD40-rpts      ____)        (_______________WD 6_______________)   (_________________WD 7______

Query      321 AAAFDGHISIYSIMGGSNDNANNLQADQLSSSFGNMDPFGTGKTLPPLQLPQQTSPQSTITPLKKPPKWIRRPVGASFAF 400 
WD40-rpts      ___________)                                                                    

Query      401 GGKLVTLDNIKPTAQQPQQTAAHVVHISQVVTETDFIHRSNQLQTTLNAGNFLEYCQNKIETVQNEFERTVWSFLKVNFE 480 
WD40-rpts                                                                                      

Query      481 EDARLKYLELLGYEKEELALKIASALEGNCKPKEADMDKEEVLAEEEADSDLDDIPVNEEEPVVEETSNTEVPPAPASDA 560 
WD40-rpts                                                                                      

Query      561 INLKVSQDIDGLITQALLTGDYEAAVNLCLHDNRMADGIILAIAGGPELLAKTQRKYFSKTESKISKLISAVVMKDWLDI 640 
WD40-rpts                                                                                      

Query      641 LETCDLQNWKEALAAVMTYAKPEEFSALCGLLGSRLESSEDVELQAQACLCYICAGTVEQLVSFWTKTQDSCSPLSLQEL 720 
WD40-rpts                                                                                      

Query      721 VEKVVVLQRAVEKAQGAVPADMGALLAEKMNQYASLLASQGSLQTAISYLPTNTEQVSVQQLRERLSRALGQHQHPQQPA 800 
WD40-rpts                                                                                      

Query      801 AAVTGIQKMHQTRPAAVPMQTYSQPQPPAQPAAPAVPPQYYQQGRSATTVTSWSNQTPTALPSVPRQLVPSSDPQGDSTP 880 
WD40-rpts                                                                                      

Query      881 PAFGLQSPAMASVPASTPFMYSQQYQNYPPVQQFTPSAGTPGIYQPLPYASSAGSPLPPPPSSSSAAVYPPQFMLSASSQ 960 
WD40-rpts                                                                                      

Query      961 ASAPPQSFCPPPAVSSGGCFQHGGPGSPTSYLPPPGARAPGTQHEPALIPASQRTDGFYQETAWGLEGPQNGWNDPPALS 1040
WD40-rpts                                                                                      

Query     1041 RAAKKKKVPQHFTPPAPITAPIMAPLGDPQAPAGMQTLQPQQQVPDQSAGPATFTPIQQQPLGPRNPSMPQGNMEGAPGA 1120
WD40-rpts                                                                                      

Query     1121 PIGDVIKPLQAIPTEKITKKPIPEEHMVLKTTFEGLIQKCLTAASDPQTKRKLDDAHKRLELLYDKLREQTLSPAIIGGL 1200
WD40-rpts                                                                                      

Query     1201 HNMAHSIECRSYADGLNIHTHIVSNSNFSETSAFMPVLKVVLTQANKLGV 1250
WD40-rpts                                                        

7 WD40-repeats found in QUERY=ENSDARP00000104171 (Len=1250):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     7-47       3.13  243.82  0.03177        5.0%     45.08
  WD 2:  Seg  6    48-102      2.78  229.39  0.04928       22.5%     42.75
  WD 3:  Seg  9   117-151      5.36  335.90  0.00185       20.0%     46.78
  WD 4:  Seg 12   152-197      4.16  286.68  0.00850       20.0%     37.44
  WD 5:  Seg 15   201-245      3.53  260.37  0.01913       27.5%     49.60
  WD 6:  Seg 19   254-289      6.16  369.21  0.00066       27.5%     40.54
  WD 7:  Seg 22   293-332      5.17  328.29  0.00234       22.5%     50.33

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-47     NRTA-----IQAWS------PAQQHPI--YLAAGTS-AQ--------QL-DATFSTNA---SLEIFE
   WD 2   48-102    LDLA-----DSALAMKSCGSFSSPHRY--HKLVWGP-HGIENQGLPSGV-LIAGGENG---NIILYD
   WD 3  117-151    -----------QSE-------KHTGAV--RALDVNSFQS--------NL-VASGGNES---EIYIWD
   WD 4  152-197    LNNFSSPMTPGPKT-------QPQEDI--SCVAWNK-QV--------QHILASASPSG---KASVWD
   WD 5  201-245    -NDL-----IIKVS-------DHSNRMHCSGLAWNP-EV-------ATQ-LVLASEDDRMPVIQMWD
   WD 6  254-289    ----------KVLE-------NHTRGI--LAIAWSVADP--------EL-LLSCGKDN---RILCWN
   WD 7  293-332    -AEV-----LYELP-------TSTQWC--FDIQWCPRNP--------AV-LSAAAFDG---HISIYS

   WD40 Template    TGEC-----LRTLS-------GHTSGV--TSVSFSP-DG--------KR-LVSGSEDG---TIKVWD