Input parameters:

  Query = ENSDARP00000104051 (Len=619)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000104051, Len=619):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRFLGHHGDNTQLSKRNKPAEVKMAARHEAAEEAVDGPYYLEKVFIPEDSEDDYQYDEVTVDEFSVTEGEEDLETAVKA 80  
WD40-rpts                                                                                      

Query       81 ALDQTDGSPQRVSSARHPVPKIPEVVDDFLRNYLVNMGMKKTLNCFQTEWFEMKHKGLINTDKTELIPDVYTHNQLLDNE 160 
WD40-rpts                                                                                      

Query      161 LKIVQKERDNYKQAAFEAGETIIKLQRERDFHRMQHKRVVQEKNRLTEDVKKLKKHYASYEPALRQLNDKYQTAVRQKML 240 
WD40-rpts                                                                                      

Query      241 VSLERDRAFSQVQNLDGSLRSSRTQTASKPTNSPQEREKMQRSPEKEAHLPCDDARKHPKDSEFPSSTRLNPYLPQIKAL 320 
WD40-rpts                          (___________________________________________________WD 1____

Query      321 TSPNTKSANLSLSKSFKAHTMAVSFLALHPRKMIVASSSDDQLWKLWAIPKGEMIMTGEGHTDWLSSCSFHPSGDFLGTT 400 
WD40-rpts      _______________________________________________)   (_________________WD 2_______

Query      401 SGDTTVKIWDFAQSRCVLSLEGHLHATWACSFHSCGDFVASCSMDNTVKVWDLNSERCRCTLRGHVDSVNSVSFLPFSNI 480 
WD40-rpts      _________)   (_________________WD 3________________)   (_________________WD 4___

Query      481 LLTCSADKTLSLWDARAGLCAQTFYGHKHSCNHAAFNITGDTIASCDSFGVVKLWDVRNVSAMVSMDTGPHPSNQVAFSP 560 
WD40-rpts      _____________)   (_________________WD 5________________)   (_________________WD 

Query      561 NGRVLAVASNDGSVKTVEVASLHVSSLTAHEDAVQSVTFDHKGEHLLSAGSDGAIHIWS 619 
WD40-rpts      6________________)(__________________WD 7_________________)

7 WD40-repeats found in QUERY=ENSDARP00000104051 (Len=619):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   261-368      4.31  292.53  0.00709       22.5%     47.25
  WD 2:  Seg  5   372-410     10.48  547.68  2.6e-06       45.0%     57.29
  WD 3:  Seg  9   414-452     10.11  532.48  4.1e-06       37.5%     53.73
  WD 4:  Seg 13   456-494     10.30  540.30  3.2e-06       42.5%     53.48
  WD 5:  Seg 17   498-536      9.76  517.76  6.5e-06       30.0%     53.68
  WD 6:  Seg 21   540-578      9.05  488.59  1.6e-05       25.0%     57.37
  WD 7:  Seg 25   579-619      9.37  501.85  1.1e-05       32.5%     49.31

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  261-368    SSRTQTASKPTNSPQEREKMQRSPEKEAHLPCDDARKHPKDSEFPSSTRLNPYLPQIKALTSPNTKSANLS-LSKSFKAHTMAVSFLALHPRKMIVASSSDDQLWKLWA
   WD 2  372-410    -G--------------------------------------------------------------------E-MIMTGEGHTDWLSSCSFHPSGDFLGTTSGDTTVKIWD
   WD 3  414-452    -S--------------------------------------------------------------------R-CVLSLEGHLHATWACSFHSCGDFVASCSMDNTVKVWD
   WD 4  456-494    -E--------------------------------------------------------------------R-CRCTLRGHVDSVNSVSFLPFSNILLTCSADKTLSLWD
   WD 5  498-536    -G--------------------------------------------------------------------L-CAQTFYGHKHSCNHAAFNITGDTIASCDSFGVVKLWD
   WD 6  540-578    -V--------------------------------------------------------------------S-AMVSMDTGPHPSNQVAFSPNGRVLAVASNDGSVKTVE
   WD 7  579-619    VA--------------------------------------------------------------------SLHVSSLTAHEDAVQSVTFDHKGEHLLSAGSDGAIHIWS

   WD40 Template    TG--------------------------------------------------------------------E-CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD