Input parameters:

  Query = ENSDARP00000103947 (Len=1446)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000103947, Len=1446):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 FIMHERHLPASPNWYCSRCSDINSKGVFGFGAKNTVYLLNVTAASPAVTVFLSAGELAGHTERVSGFAFCPNEGQEHICC 80  
WD40-rpts      (_________________WD 1_________________)           (__________________WD 2______

Query       81 STSDDKKVKIWDAEQKILLKEHNVHQNTITAVHWSPVQKLLLVTGDEKGIVVCYWFSSNDTQSFFPEPRTIFCLSCSPHD 160 
WD40-rpts      ___________)   (_________________WD 3________________)   (_________________WD 4_

Query      161 ENLIAVGYKDGMIAVIDISKKGEVVHRLRGHDDEIHALAWCPRPREEPLYGRSEDNADTRLIRYGSSGVTEGAEAGCYLA 240 
WD40-rpts      ________________)                                    (_________________WD 5_____

Query      241 SGSRDQTMRIWSTARRKGVMTLKLPFLKRRGAGVDPTVKERLWLTVHWPKERPSQIVSSCFGGEIVVWDLMKSGKQKWSL 320 
WD40-rpts      ___________)           (____________________WD 6____________________)           

Query      321 LGSSSDGQNHSRIVFNMSSFRCGDRELLLSTSMDREIKCWDLESLECCWTLPTLGGFVYCLSFSPVGTGCLALGVGDSMI 400 
WD40-rpts       (_________________WD 7_________________)   (_________________WD 8______________

Query      401 RVWNTLSIQNQYDIKTFWQGIKSKVTALAWHPLKEGSLAFGTDDGKVGIYEVYSNSHRPPQISSTYHRRTVYSLNIELGL 480 
WD40-rpts      ___)       (_________________WD 9_________________)                             

Query      481 PPKTIRGAGDKPAYSLYSCAGEGVIFQHDPWKLSGEASNIDKLIRDTNNIKHKMPPHTDLSWKPDGSILAIGNEDGSIEV 560 
WD40-rpts                                                   (________________WD10______________

Query      561 LKAPMLKLLCTVQQHHKIINSLRWHHQHSSQNELQYLLASGSSNATIYIHDLRSAVESPSESPVSVTEPFRTLSGHTNKI 640 
WD40-rpts      _)   (____________________WD11____________________)               (_____________

Query      641 TDLAWSPHHDGHLVTVCYDGTAQVWDVLKEEPVCNYRGHSGRLLCVQWSAVHPDLIWTGGDDFTLQEWAVSKQEHITPPK 720 
WD40-rpts      ____WD12_________________)   (_________________WD13_________________)     (_____

Query      721 SKKRTEMEKKRVPQKKPKKKKKAPGKGGMKAEESEMPLGEEVKGAAGSGAEEGQSDNEEEEEEKEYTDAPSVTAQPLKCR 800 
WD40-rpts      _____________WD14_________________)                                             

Query      801 SACVGVGLMKLLIESKLLNEQTSKKINLSLKKRKPRSILPLSTSMDHRPKDELQQDCLTLAAVRHSHGKNNQLENINRAG 880 
WD40-rpts                                                                                      

Query      881 DHIQLGLFTDRDALYRMMQEEEESHVEAAHYDSVLYLRLWRGDLIGALNLAMEKGELTDHLLSLAPMDSAGYQVWLRTVE 960 
WD40-rpts                                                                                      

Query      961 AYVKQLCHHEQFLKAASHLLSIHKLYEAISLLKSHQFYREAIALARARLQPEDPVLKDLYMSWAAVLEKDGHYATAAKCY 1040
WD40-rpts                                                                                      

Query     1041 LATDSSFDAAKVIGKKGDVTSLKTAAHLAHITGESELALSLSLRCAKDLIATQDWTAAQDVLRTQDSLLGHRLVFSVNEI 1120
WD40-rpts                                                                                      

Query     1121 LTQRLADTDVVSWSSSSSHWWSSSREEVFFSAVLRVWQREFGVDPADHHKLKTLHQQLKAIENPPHTTTGPVKQLLSHIS 1200
WD40-rpts                                                                                      

Query     1201 LDVTLCALSELLCDWPSVVEELLRALSRASAAGSFTLMAELSLLLFPHGQRCSCTQNNNTQSLHITTAYCSIEAFICYPL 1280
WD40-rpts                                                                                      

Query     1281 MYEKWWTSTSTNNSISNGHRLTLTDGDEEKCNGEAQSDGFWKILLSEAHADLQANQRAIAEIQKRVSSLIQQHSRCKDPE 1360
WD40-rpts                                                                                      

Query     1361 TALEGSAGDMSNSCCVSFSSSESLSALTAQVAEHHKALAAVPEHIRKYPFPDVLECCIVLLYMEKHFNLIPQHICSEATA 1440
WD40-rpts                                                                                      

Query     1441 LLRKYG 1446
WD40-rpts            

14 WD40-repeats found in QUERY=ENSDARP00000103947 (Len=1446):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40       4.39  295.91  0.00639       12.5%     49.20
  WD 2:  Seg  5    52-92       6.90  399.76  0.00025       32.5%     42.54
  WD 3:  Seg  8    96-134      5.83  355.52  0.00101       25.0%     58.13
  WD 4:  Seg 12   138-177      5.16  327.97  0.00236       25.0%     53.80
  WD 5:  Seg 18   214-252      4.59  304.37  0.00492       22.5%     35.66
  WD 6:  Seg 23   264-309      3.55  261.36  0.01856       27.5%     39.19
  WD 7:  Seg 28   322-361      5.40  337.84  0.00174       25.0%     34.01
  WD 8:  Seg 31   365-404      6.73  392.80  0.00032       40.0%     50.80
  WD 9:  Seg 35   412-451      5.83  355.34  0.00101       22.5%     46.85
  WD10:  Seg 43   526-562      6.34  376.63  0.00052       30.0%     44.41
  WD11:  Seg 47   566-611      5.90  358.30  0.00092       27.5%     57.85
  WD12:  Seg 51   627-666      7.95  443.16  6.6e-05       47.5%     53.27
  WD13:  Seg 55   670-709      6.19  370.44  0.00063       22.5%     56.50
  WD14:  Seg 59   715-755      3.09  242.24  0.03334        7.5%     10.06

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-40     FIMHERHLPA-SPNWY------CSRCSDI-NS---K-------GVFGFGAKNTVYLLN
   WD 2   52-92     --LSAGELAG-HTERV------SGFAFCP-NEGQEH-------ICCSTSDDKKVKIWD
   WD 3   96-134    -KILLKEHNV-HQNTI------TAVHWSP-VQ---K-------LLLVTGDEKGIVVCY
   WD 4  138-177    -SNDTQSFFP-EPRTI------FCLSCSPHDE---N-------LIAVGYKDGMIAVID
   WD 5  214-252    -EDNADTRLI-RYGSS------GVTEGAE-AG---C-------YLASGSRDQTMRIWS
   WD 6  264-309    LPFLKRRGAG-VDPTVKERLWLTVHWPKE-RP---S-------QIVSSCFGGEIVVWD
   WD 7  322-361    GSSSDGQNHS-RIVFN------MSSFRCG-DR---E-------LLLSTSMDREIKCWD
   WD 8  365-404    -LECCWTLPT-LGGFV------YCLSFSP-VG--TG-------CLALGVGDSMIRVWN
   WD 9  412-451    -YDIKTFWQG-IKSKV------TALAWHPLKE---G-------SLAFGTDDGKVGIYE
   WD10  526-562    ---DTNNIKH-KMPPH------TDLSWKP-DG---S-------ILAIGNEDGSIEVLK
   WD11  566-611    -LKLLCTVQQ-HHKII------NSLRWHH-QH---SSQNELQYLLASGSSNATIYIHD
   WD12  627-666    -TEPFRTLSG-HTNKI------TDLAWSPHHD---G-------HLVTVCYDGTAQVWD
   WD13  670-709    -EEPVCNYRG-HSGRL------LCVQWSA-VH---P------DLIWTGGDDFTLQEWA
   WD14  715-755    HITPPKSKKRTEMEKK------RVPQKKP-KK---K-------KKAPGKGGMKAEESE

   WD40 Template    TGECLRTLSG-HTSGV------TSVSFSP-DG---K-------RLVSGSEDGTIKVWD