WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000103874 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000103874 (Len=3522) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000103874, Len=3522): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLAEHRENSRAGFGLKKPLKMNMVKRIMGRPRQEECSPQDNALGLMHLRRLFSELCHPPRHMTQKEQEEKLYMMLPVFNR 80
WD40-rpts
Query 81 VFGNAPPSTMNEKFSDLLQFTTQVSRLMVTEIRRRASNKSTEAASRAIVQFLEVNQSEETSRGWMLLTTINLLASSGQKT 160
WD40-rpts
Query 161 VDCMTTMSVPSTLVKCLYLFFDLPHMPEVPAATQTELPLADRRALLQKVFVQILVKLCSFVSPAEELAQKDDLQLLFSAI 240
WD40-rpts
Query 241 TSWCPPHNLPWRKSAGEVLTTISRHGLSVNVVKYIHEKECLSTCIQNMQQSDDLSPLEIVEMFAGLSCFLKDSSDVSQTL 320
WD40-rpts
Query 321 LDDFRMCQGYTFLIDLMIRLEQAKEDESKDALKDLVNLVTALTTYGVSELKPAGLTTGAPFLLPGFVVPQPSGKGHTVRN 400
WD40-rpts
Query 401 IQAFSVLQNAFLKAKSGRLARMILEAIANIYAADYANYFILEAQHTLSQFAERVTKLPEVQSKYFELLEFVVFGLNYVPC 480
WD40-rpts
Query 481 KELFSVSVLLKSSTSYGCSITATRTLLKLGRHHPVFSDVFREVGLLEVLVNLLHKYAALLKDPTQTHSDQGDSKNNVAEE 560
WD40-rpts
Query 561 QKQLAWLVMETLTVLLQGSNTNAGLFREFGGARCVHNIVKYRQCREHALMIIQQLVLSPSGDDDMGTLLGLMHSAPTAEL 640
WD40-rpts
Query 641 QLKTDILRALLAVLRESHRTRTVFRKVGGFVYVTSLLLAMERSLCSPPVIGWEKVNQNKVFELLHTIFCTLTAAMRYEPA 720
WD40-rpts
Query 721 NSHFFRTEIQYEKLADAVRLLGCFSDAKKVGPATVFPSNAQPFQRLLEDEIIPAENVCPTLKHCSKLFIYMYKMATDSFD 800
WD40-rpts
Query 801 SRAEQVPPCLTHETSLPSPWGTPAITRKRHGYSSSSNSASGKALTDLKLHLGNSSQHSSDPVVIHPGAVLAMLDLLPSVS 880
WD40-rpts
Query 881 SDTQPEHALDLQLAVANILQLLVHSERNQQILCEAGLHSRLLQRCSCALGDEDHPLHPPLQRMFERLASQALEPMVLREF 960
WD40-rpts
Query 961 LRLGNPLNCGAWDKKLLKQYRVHKPSSLSYEAEMRNSMTLSMEGFGPDSVFTINEDNSQYRISRSLVRSAEGSTVPLTRV 1040
WD40-rpts
Query 1041 KCLVSMTTPHDIRLHGSSVTPAFVELDTSLEGFGCLFLPSLAPHNAPSSNANTSGVSDGAVVSGMGNGERFFPPPSGLSY 1120
WD40-rpts
Query 1121 STWFCVERFSTPPQSHPVRLLTVVRRATSSEQHYVCLAIVLSAKDRSLIVSTKEELLQSYVDDFSEESSFYEILPCCARF 1200
WD40-rpts
Query 1201 RCADLITEGQWHHLLLVMSKGMLKNSMATLYIDGQMVSTVKLHYVHNSPGGSASANPPVVSTVYSYIGTPPAQRQLSTLV 1280
WD40-rpts
Query 1281 WRLGPTHFLEEVLPAASVAAIYELGPNYVGSFQAVYLPCKDSKTEAVPPCPVGLVPEEKVSFSLFAHSVSALTVAKIRKV 1360
WD40-rpts
Query 1361 YNKLDSKAIAKQLGVSSHESATPVKLVHNAVGHLNGSARTVGAAVIGYLGVRAFVTKPVATNLQYIGGAAAILGLVAMAS 1440
WD40-rpts
Query 1441 DVEGLYAAVKALVCVVKSNPLASKEMERIKGYQLLAMLLKKKRPLLNSHILHLTFSLVGTVDSGHETSIIPNSTAFQDLL 1520
WD40-rpts
Query 1521 CDFEVWLHAPYELHLSLFEHFIELLTESSEAAKNAKLLREFQLIPKLLLTLRDQSLSQPTITAIGNVLSLLLQGFPNTYD 1600
WD40-rpts
Query 1601 LLRFGQFISSTLPTFAVCEKFVIMENTNEEKIDRGADEEFGGLLSSNLILLRNRLLDILLKQLFSCKEKGTVNAQACEEL 1680
WD40-rpts
Query 1681 VRTLGFDWLLMFMEEHIHSSTVTAALLILVVLLSNQSILSRFKEGLSGGGWLDHTDSVLTNKIGTVLGFNVGRSAGGRST 1760
WD40-rpts
Query 1761 LREINRDACHFPGFPVLQTLLPKHTNVPEIYFMLMALFFQQPITELPESLQFDLDSIWTFIFGVPASSATVVGSLHNMCT 1840
WD40-rpts
Query 1841 ETAFLLLAMLRSMLNLPWQSEEEGSWLREYPITLMQFFRYLYHNIPDLAPMWHSPDFLCTLAATVFPFNIRPYSEMVSDL 1920
WD40-rpts
Query 1921 DDEASSPTEEFKAFVTDTGMNRSQSEYCNVGNKTYLTNHPAKKYVFDFMRLLIMDNLCMTPASKQTPIIDLLLEASPERS 2000
WD40-rpts
Query 2001 TRTQQKEFQSYILDSVMEQLLAADVLMGEEASLPITTGGSYQVLVNNVFYFTQRVVDKLWQGMFNKESKLVVDFIVQLIT 2080
WD40-rpts
Query 2081 QSKRRSQGLSLDSVYHCLNRTILYQLSRPHKTVPQQVTLLDSLRVLTVNRNLVLGPGNHDQEFVACLAHCLINLHTGSSV 2160
WD40-rpts
Query 2161 EGFGLEAEARMTTWHVAVPSENESDSVQSQDVSEGRQLLLKAVNRVWTELMHSKRQMLEDIFKVSLPVNDRGHVDIGTAR 2240
WD40-rpts
Query 2241 PALEEPAAKSWQNHLVHEKKCISRGETVAPANQSKLSRVSSGFGLSKLTGSRRSKKESGMNKNNLSAQETFQWMFTHIAV 2320
WD40-rpts
Query 2321 VRDLVAMQYKEHQERQQNALKYVMDEWAGIEYELLRERGLWGPPIGSHLDKFQLDMTEGPCRMRKKMVRNDMFYIHYPYV 2400
WD40-rpts
Query 2401 PDPEPNASTQKPARYRRAISYDSKEYYMRLLSGNPGMYQHSIEQNTEGETTQQEPEHGEDTIARVKGLVKAPLKRSRSTA 2480
WD40-rpts
Query 2481 DGADEESQDQLQELLESGAMDEEQKTDNTTLLRLLEEGEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTVTRE 2560
WD40-rpts
Query 2561 IRDIETLPPNMHEPIIPRGARQSKSQLKRTCSIFAYEDIREVHKRRYLLQPMAAEVFSGDGRNYLLAFQKGVRNKVYQRF 2640
WD40-rpts
Query 2641 LAVVPSLADSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFPWILAD 2720
WD40-rpts
Query 2721 FDSEELDLNNPKTFRNLSKPMGAQTDDRLIQYKKRFKDWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQG 2800
WD40-rpts
Query 2801 GHFDLADRMFHSVREAWLSASKHNMADVKELIPEFFYLPEFLLNSNNFDLGSKQNGTKLGDVILPPWAKGDPREFIRVHR 2880
WD40-rpts
Query 2881 EALECDYVSAHLHEWIDLIFGYKQQGPPAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFKKPHPP 2960
WD40-rpts
Query 2961 KRVRSKSNGEAPGGPVTLNSTLDKIFFHHLDNLRPSLTPVKELKEPVGQIVCTDKGILAVEQNKVLVPPAWNKTFAWGYA 3040
WD40-rpts
Query 3041 DLSCRLSNYESDKAVVVYECLSEWGQILCAICPNPKLVITGGFSTAICVWETGSSKEKAKSLTLKQALLGHTDAVTCLTA 3120
WD40-rpts (______________________WD 1__
Query 3121 SSAYHIVVSGSRDRTCIIWDLNKLSFVTQLRGHRAPVSALCINELTGDIVSCAGTYIHVWSINGSPVASANTFTGRSQQI 3200
WD40-rpts ___________________) (_________________
Query 3201 LCCCVSEMNEWDTQNVIVTGHSDGVVRFWRIEFLQVPETPAPEPIEPPDVPDCCGEIEGRDAPDEDSSESEGEEASLSQE 3280
WD40-rpts ____WD 2_____________________)
Query 3281 PKPRSSNSQPSSAVHRPKPRTGASWSVDSSSDDSRRWSDTLSIDEKEGFVFVNYSEGQVRPGVPVQPHSQQPSGPSHGPV 3360
WD40-rpts
Query 3361 PQPLQPSTMEARSYNKLKPGYRWERQLVFRSKLTMHTAFDRKDNAHPAEITALAISKDHSKILVGDGRGRVFSWSVSDQP 3440
WD40-rpts
Query 3441 GRSTADHWVKDEQVDSCSGCTVRFSLTERRHHCRNCGQVFCQKCSRFQSEIKRLKISSPVRVCQNCYYNLQHERSSEENP 3520
WD40-rpts
Query 3521 RN 3522
WD40-rpts
 2 WD40-repeats found in QUERY=ENSDARP00000103874 (Len=3522): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 35 3092-3140 6.53 384.49 0.00041 42.5% 53.58 WD 2: Seg 43 3183-3230 3.25 248.73 0.02734 22.5% 43.94Multiple sequence alignment of 2 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3092-3140 TGSSKEKAKSLTLK---QALLGHTDAVTCLTASS-----AYHIVVSGSRDRTCIIWD WD 2 3183-3230 NG---------SPVASANTFTGRSQQILCCCVSEMNEWDTQNVIVTGHSDGVVRFWR WD40 Template TG---------ECL---RTLSGHTSGVTSVSFSP-----DGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |