WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000102911 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000102911 (Len=4870) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000102911, Len=4870): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 TEGGGKAGREDSRKMAAAAGALPGSPDWVVLRDGCLRCDEEGLRSLSYHPALNAILAVTSRGSIKVIDGTSGAILQASAL 80
WD40-rpts (_______________WD 1_______________)
Query 81 HAKPGGRVRCQYFPAVDKVLFVDDYAVGCRKDLNGILLLDTALQAPVSKPEDMVQLELPVTEAQQMLYACMEKVDVSNTE 160
WD40-rpts
Query 161 GYDLFLTQLKEGLENTSHETAANHKVAKWATVTFHLPHHVLKVVTNAIVNELKKLNQNVAALSVASSVMDRLSYLLPSGR 240
WD40-rpts
Query 241 PELGVGPGRSVDRSLMYSEANRRETFTSWPHSGYRWAQPDPMAQAGFYHQPASTGDDRAMCFTCSVCLVCWEPTDEPWSE 320
WD40-rpts
Query 321 HERHSPNCPFVKGEHTQNVPLSVTLATSPAQFPSADGSDKIVCYGFGSCPHFLATATKRGKICIWDVSKLMKVHLKFEVN 400
WD40-rpts
Query 401 PYDPAILRQLILSGSEQQNLTGTELRRPTLSWLEEATCCSDLPKLEGDSDDQIEDSDSEEHSRSESVTGPLGQKETMEVS 480
WD40-rpts
Query 481 LGVTALSVLQQPEKLQWEVVASVLEDTVKDLEELGANPPHSLGPPKADKAKDRPAEHHNIPFPCLLAGGLLSYRSAASSP 560
WD40-rpts
Query 561 LGPPPSRRSMDSPVRTAAPEGLAPDQGPMEIESCNPSTDLGSPNLPPAAPVHRTMPVLLLYSIKEADEKSSGKVFTQMNN 640
WD40-rpts
Query 641 LMSKGLHDEGFTVPQIIEMEFDSHEQLLLQDPPITYIQQFADAAAGLGPLDGEKWSSMAPRPGSLVQCLRLPKALEEENL 720
WD40-rpts
Query 721 YVDSITPCSDGLHLLVGLQPCSVESLSAINQVEVLNTLNRLHSALCGHRKGQTMANGHDAHTGTSPPQTPLILPPPDQQQ 800
WD40-rpts
Query 801 PHTSRPLGGSGGGGYLALYKLNYSTRIVTLEEEPVKVQQIRDPRDAVTSLLLLPPDVLDGREDDGEETSEESTPSGLKNG 880
WD40-rpts
Query 881 TGKEKRGEVAGLGHLVVTTQAGYIMILDLSTLEVLAKVEPAKKEGTEEVDPFVSVTYCSGTDRLCACTKGGELHFLQIGG 960
WD40-rpts
Query 961 VCDDIDDADIFVDGPLSNRADQLLDGAKPTSNPSSPGITGVDLLVDQPLTVETLSSLVELTRFETLTPRFSATVPPCWVE 1040
WD40-rpts
Query 1041 VQQEQQQRRHPQHLHQQHHGDAAQHTRTWKLQSDSSSWDEHVFELVLPKACMVGHVDFKFVLNSSITNIPQIQVTLLKNK 1120
WD40-rpts
Query 1121 APGLGKVNVLHSNGEKNGQPHLHDFSEDIQFMDIEESPGYRLCPFLQEHKDDILCGPVWLSSGLDLSGHAGMLSLTSPKL 1200
WD40-rpts
Query 1201 LKGMAGGKYRSFLVHIKAVSDKGLDEGLRPVVRMPSAKPQSSKAHSLSSLLQRAQATKEKASTSKADPQSVPKKPDNLRG 1280
WD40-rpts
Query 1281 CDLLQEVSVTIRRFKKTSVPKERVQRCAMLQFPELHEKLLRGLCKRGEDSQSSEHCQSLILDILCWLAGVYSNGPCSLRE 1360
WD40-rpts
Query 1361 GKEGLLTKTRRRLTDIIRACFFEAGRSIAHKCSRFLALCISTGKGDPGQQGFGQALFKALLDNMPYLPAAATGGSVFWYF 1440
WD40-rpts
Query 1441 VLLNYVKDEDLAGCSTACASLLTAVSRQLQDRLTPLEALLQTRYGLYGSPFDPVLFDLEVSGSSCKNAFSSGIGVQSDEI 1520
WD40-rpts
Query 1521 DLSDILSGNGKVNSSGAAEGSFTALTGLLEVEPLHFTCVSTSDGTRVERDDAMSTFGVTPTVTGLSAGSVGEASTALSSA 1600
WD40-rpts
Query 1601 AQVALQSLSHAMVSAEQQLQVLQEKQQQLLKLQQQKAKLEAKLHQTTSAAATAASGVVNSVPSNPSSAPGFFIHPSDVIP 1680
WD40-rpts
Query 1681 PTPKTTPLFMTPPLTPPNEAVSAAISVELAQLFPGSVIDPPPVNLSAQNKNNQKAKPNPMGSGLALAISQASHFLQPPPH 1760
WD40-rpts
Query 1761 QSIIIERMHSAVGARRFVTLDFGRPVLLTDALIPTCADLASLSIDIWTLGEEVDGRRLVVATDISTHSLILHDLLPPPVC 1840
WD40-rpts
Query 1841 RFMKITVIGRYGSTNARAKIPLGFYYGHTYILPWESELKLMHDPLRGESEAAGQPDLDQHLSMMVALQEDIQCRYNLACH 1920
WD40-rpts
Query 1921 RLETLLQNIDLPPLNSANNAQYFLRKPDKAVEEDSRVFSAYQDCIQLQLQLNLAHHAVQRLRVSLGATRKQLPENYDPRE 2000
WD40-rpts
Query 2001 LVQNSSTEQLRTIIRYLLDTLLSLLHSCNGNSVPSVLQNTFHAQACEELFKQLCISGTPKIRLHAGLLLVQLCGGERWWG 2080
WD40-rpts
Query 2081 QFLSNVLQELYNSEQLLIFPQDRVFMLLSCIGQRSLSNSGVLEGLLNLLDTLLSPLQQAGAAQPRRTEGVLDIPMISWVV 2160
WD40-rpts
Query 2161 MLVSRLLDYVASVEDEASAAKKPLGGNQWSFINNSLQSQNPSRSAKGSNSSLDRLYSRKIRKQLVHHKQQLNLLKAKQKA 2240
WD40-rpts
Query 2241 LVEQIEKEKIQSNKGSSYKLLVEQAKLKQATSKHFKDLIRLRRTAEWPRSTLDSEASVAKETPEVELLPFTLAHERCICV 2320
WD40-rpts
Query 2321 VQKLALFLLSMDFTCHADLLLFVCKVLARIANATRPTIHLCEVVSEQQLERLLLLLVGTDFNRGDISWGGAWAQYSLTCM 2400
WD40-rpts
Query 2401 LQDILAGELLSPGCVDGMEGAGADEAGAASSSVVVDSDDSLPQPTPIPLVETIDEPLGPDIIAGAPPLSSLEKDKEIDFD 2480
WD40-rpts
Query 2481 LLQDLMDVDIDPLDIDLEKDPLAAKVFKPISSTWYDYWGADYGSYSYNPYTGGVGIPVSKPPAATTVEKPGSQNLSVSVS 2560
WD40-rpts
Query 2561 QALDARLEVGLEQQAELMLKMMATLEADAILQALTSTSPSVAQSANGTDDSLLRGGFHNSPTSSSLMVQASSIPMLSTCF 2640
WD40-rpts
Query 2641 NKLFSLLQVHHVQLESLLQLWLTLSLSSCSGGSEESGSDIFLFNASRVPTIPLNQASISSFLSVLAWYPNTSLRTWCLVL 2720
WD40-rpts
Query 2721 HSLTLMTNMPASASSSGMGVQESTAQQMVSDPTLVHVLVRFLSGGNPHGTSQHSSQVGPTATQALQEFLTRLQVHLSSTC 2800
WD40-rpts
Query 2801 PQMFSEFLLKLLHILSTERGPFQSGQGPLDAQVKLLEFTLEQNFEVVSVTTILAVIESITFLVHHYITCSDKVVSRSGSD 2880
WD40-rpts
Query 2881 SSVGARACFGGLFANIIRPGDAKAVCGETTRDQLMFDLLKLVNALVMLPLSGDREFSGRLPPAGGATDSVSDEEKVCGSK 2960
WD40-rpts
Query 2961 ECGAAGTAQHQGPAAGVADLVLANQQIMSQILSALGQCNSSAMAMIIGASGLHLTKHENFHGGLDAISVGDGLFTILTTL 3040
WD40-rpts
Query 3041 SKRATSVQVMLQPILTYMACGYMGRQGSLSTCQLSEPLLWFILRVLDTSEALKAFHDMGGVQLICNNMVTSTRAIVNTAR 3120
WD40-rpts
Query 3121 SMVSTIMKFLDSGPGKAADGSLKARVLTSEPDNAEGLHNFAPLGTITSSSPTAQPAEVLLQATPPHRRARSAAWSYIFLP 3200
WD40-rpts
Query 3201 EEAWCDLTIHLPAAVLLKEIHIQPHLASLATCPSSVSVEISADGVNMLPLSTPVITSGLTYIKFQLVKAEVASAVCLRLH 3280
WD40-rpts
Query 3281 RPRDASTLGLSQIKLLGLTAFGNTSSATVNNPFLPSEDQVSKTSIGWLRLLHHCLTHVSDLEAMMASAAAPTANLLQTCA 3360
WD40-rpts
Query 3361 ALLMSPYCGMHSPNIEAVLVKIGLQSTRIGLKLIDILLRNCAASGTDLANLNSPLLFGRLNGLSSDSTIDILYQLGTTQD 3440
WD40-rpts
Query 3441 PGTKDRIQALLQWVYDSSRVASLKQSSPSGYVGPIAPPPREYGLLMPSPSHLHCVASVLWHSYELPVDYDLPGLLNRELF 3520
WD40-rpts
Query 3521 ELLYNWSMSLPSNMVLKKAVDSLLCSMCHIHPNYFSLLMSWMGIVAPSSAQTNAQRRMAMTDDGKKQHDLNSAASLTDDS 3600
WD40-rpts
Query 3601 KHARTPVTVPISLSECQLVTLAAASQSPGAIQQLLDSGLPSLLVRSLADLCCNLLVSADLPLPSGFSSQTERRPYSHNQH 3680
WD40-rpts
Query 3681 SPSSTNRPPLSPELAAPVLRFLTEVGNSHTMKDWLGGPEVNPLWTALLFLLCHSSASGTSHASAAPHTSGASYSLASSSR 3760
WD40-rpts
Query 3761 SSGLTTQQRTAIENATVAFFLQCISCHPNNQRLMAQVLCELFQSAPQRGNVPVSGNISGFIRRLFLQLMLEDEKVTVFLQ 3840
WD40-rpts
Query 3841 SPCPLYKGRINATSHVIQHPMYGAGHKFRKLHLPISTTLSEVLDRVSDTPSITAKLINEQKEDKEKKNHEEKEKMKADNG 3920
WD40-rpts
Query 3921 FQDNYSVVVASGLKSQSKRALSTPPRPPSRRGRVLSDKLAASSGVDPSAKTISVPVFHLCHKLLPGQPLPPEMTLAQLLT 4000
WD40-rpts
Query 4001 LLYERKLPQGYRSIDLTVKLGSKIISDPGLSKTDSFKRLRTEKDHCEMLSGCPDDEPMTPGDEGLDAAVDDSLLETSPIQ 4080
WD40-rpts
Query 4081 SPLQVFAGMGGLALIAERLPMLYPDVIQQVSAPVVPSTTQEKPKDSDQFEWVTIEQSGELVYEAPETIAAEPPPIKSSVQ 4160
WD40-rpts
Query 4161 TMSPIPAHSLAAFGLFLRLPGYAEVLLKERKHAQCLLRLVLGVTDDGEGSHILQSPSANVLPTLPFHVLRSLFSSTPLTT 4240
WD40-rpts
Query 4241 DDGLLLRRMALEIGAIHLILACLSALSHHAPRVPSGSANSSEPQVSSGHVGGTTEEQQLYWAKGTGFGTGSTASGWDVEQ 4320
WD40-rpts
Query 4321 ALTKQRLEEEHVTCLLQVLASYINPSGCVGSGETLTGEVRGHSSSLLPSVLQELLSQSCLIPAMSSYLRNDSVLDMARHV 4400
WD40-rpts
Query 4401 PLYRALLELLRAISTCTSLVPLLLPLSGDAAEEEEDEERIECQTSVGMLLAKMKTCVDTYTNRLRSKKDKSKGVMKAETS 4480
WD40-rpts
Query 4481 DPEPEGLTLLVPDIQKTAEIVYAATTNLRQANHERKMAESSKKAAARPKPLSILRSMEEKYTAAMKKLQFDTFEMVCEDE 4560
WD40-rpts
Query 4561 DSKLVFKVNYHYLSQVKNASDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFE 4640
WD40-rpts
Query 4641 FDVYFPQDYPNSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSIQSLILVAEPYFN 4720
WD40-rpts
Query 4721 EPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQMRNPSPCFKEVIHRHFYLKRAEIMAQCESWICDIQQYSSDKRVG 4800
WD40-rpts
Query 4801 RTMSHHAAALKRHTAQLREELLKLPCPEGLEPDGEEFSEKSTSLMVKELPSQDTEKQTDSPDAHCSDGQL 4870
WD40-rpts
 1 WD40-repeats found in QUERY=ENSDARP00000102911 (Len=4870): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 33-68 3.02 239.60 0.03614 27.5% 30.27Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 33-68 DG----CLRCDEEGLRSLSYHPALNAILAVTSRGSIKVID WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |