WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000102565 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000102565 (Len=1636) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000102565, Len=1636): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVKELKCILCETVYNSKQEMEEHMRSMLHHRELENLKGRDCGHECRVCGITEVSLTDYASHISSPSHKQRVDNQKRQHLN 80
WD40-rpts
Query 81 EDQDEEYFDKDIVRLIENRKEMIRKEEAAAKQAKEEQENIRKWQELRTRNMMYQPCGPWDRPYSNFPQMPKRGRGSEWQN 160
WD40-rpts
Query 161 SRFSSPECNKWFNPSRQVRCATWHAEGPPDFQKWGSYGRQGGSLHNQGNVWGGKQGKYGFCPPHLRQQFPWNNSRVNVPW 240
WD40-rpts
Query 241 GQCIPSHKFFTSSTREHQKTPNRFENQTQSEQSLEESGDHDPNKGKGQKAEKAYRWAPYPSAKLGDPSSQTNPHPPLDKS 320
WD40-rpts
Query 321 DVKSPENLNAQSYNKGSQDMERKSKSDHKRWHHKTTFYEESNSMEQKISSKNVSGCSKDSFSSTSTTRRTETPTKLSENC 400
WD40-rpts
Query 401 SKRPLKKAGSQDSVSSKSSKHSHSSSEIPQHGSSSAQQDRLLSEMLRKAKETLLDRNTSIDTPGPDSCLIGSNNMQVESS 480
WD40-rpts
Query 481 ELNKNQALHESKKKLQKNRGQETHGFDRRVSSDQEQLTSTETNIQISNVRSECRSYLQSLQVSTSTIDHEDEEDSGEMEE 560
WD40-rpts
Query 561 NPHIPVQDQVMETLDEGLCLVGEGSHSNPSQQTASDSVPSLSTLALPACLQRDLNRHMGTKVKAASHEPNLNNARRVRNV 640
WD40-rpts
Query 641 SDMRKNEAEKDSGLKPTLRQLISSSGSRRNVNWDQVYQEVNRKKQGKGLPRFGIEMVPCEPEGLNQMDEDDVPLSEGFHW 720
WD40-rpts
Query 721 DSLFDSSQVPTRKRSLSESNVVKDSPAGSSSLLNAVVPLRDSSACGSSQPAKREELQESQGHLEFQSSKGHAKGVEDVEI 800
WD40-rpts
Query 801 DVDCASDTELIDTQGAGKKRRARGDVVSPEIPNEDRKNKRQKIKAKKERCQVDQLLAVSLREEELNNSLQAVDNSLIQAR 880
WD40-rpts
Query 881 AALQAAYLEVQRLLMVKQQVTSEMNSLRTERIEILQGMQGEFEPKERHRSCEESLNTSSTQVSQITDNSVHQSSDPHSTT 960
WD40-rpts
Query 961 SSSSQPVTVKQEPVSPCKPISEHNLVISPNPGAQSTASVQMTFAACQTETTTRNNSRMDTSQDAISKAFETSTLDHRLKP 1040
WD40-rpts
Query 1041 SPVKEVCQSSQDGLANPSSPLMSASLSPKPLSPSNLSESNPVKRVRKLKKRKCLKKAKGNEQPEISESELDLEQPALRPI 1120
WD40-rpts
Query 1121 RKYRSHRRSSDLLTSPPTPEKKDKNEEMVVTEASKPQPQGIKLAKPPLNEANSDSSDLEIVELPPPVPTDFVNLDSSDPE 1200
WD40-rpts
Query 1201 EMPEKAAKEPATMHKIENQAITDPQNLACNEVTSTSEIGTRSIVKAIESEKKSASAMLESKVPSDMSDPGEEELPTEGDF 1280
WD40-rpts (______________________
Query 1281 EGHQEAVNGMHIHNGLLYTCSGDRTIRAFSLITRKCVAVFEGHSSKVNCLLVSCGGGLQQRLYSGSSDQTIRCYSLKTKE 1360
WD40-rpts __WD 1_______________________) (__________________WD 2__________________) (_
Query 1361 CVEQLSLPDRVLCLHNRWKILYIGLANGSVITLSLRNNKQLDVFECHGPRAVSCLATAQEGARRILLVGSYDTTISVRDA 1440
WD40-rpts ______________WD 3_______________) (__________________WD 4__________________)
Query 1441 KSGLLLRTLEGHTKTVLCMKVVNDLVFSGSSDQSVHAHNIHTGELVRIYKGHSHAVTVVAILGKVMVTACLDKLVRVYEL 1520
WD40-rpts (________________WD 5_______________) (________________WD 6_______________)
Query 1521 QSHDRLQVYGGHSDMVMCMVIHKSMIYTGCYDGSVKAVRLNLIQNHRCWWHGCTLIFGVMEHLQQHLLNDHTSPAQQTFK 1600
WD40-rpts (________________WD 7_______________)(__________________WD 8_________________)
Query 1601 CRWRNCDSFFTTRNSSKEAVHCHMQKHAEDDSKMEP 1636
WD40-rpts
 8 WD40-repeats found in QUERY=ENSDARP00000102565 (Len=1636): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 7 1258-1310 4.68 308.17 0.00437 20.0% 42.80 WD 2: Seg 10 1314-1355 7.70 432.74 9.2e-05 37.5% 52.11 WD 3: Seg 14 1359-1394 4.38 295.71 0.00643 20.0% 50.11 WD 4: Seg 18 1398-1439 6.06 364.79 0.00075 32.5% 51.72 WD 5: Seg 22 1443-1479 6.91 400.27 0.00025 35.0% 53.24 WD 6: Seg 26 1483-1519 6.92 400.32 0.00025 32.5% 53.88 WD 7: Seg 30 1523-1559 5.13 326.56 0.00247 20.0% 52.08 WD 8: Seg 34 1560-1600 2.98 237.93 0.03802 5.0% 51.67Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1258-1310 LESKVPSDMSDPGEEELPTE-GDFEGHQE-AVNGMHI--HN---GL--LYTCSGDRTIRAFS WD 2 1314-1355 -RK---------------CV-AVFEGHSS-KVNCLLVSCGGGLQQR--LYSGSSDQTIRCYS WD 3 1359-1394 -KE---------------CV-EQLSLP----DRVLCLHNRW---KI--LYIGLANGSVITLS WD 4 1398-1439 -NK---------------QL-DVFECHGPRAVSCLATAQEG---ARRILLVGSYDTTISVRD WD 5 1443-1479 -GL---------------LL-RTLEGHTK-TVLCMKVVND-----L--VFSGSSDQSVHAHN WD 6 1483-1519 -GE---------------LV-RIYKGHSH-AVTVVAIL--G---KV--MVTACLDKLVRVYE WD 7 1523-1559 -HD---------------RL-QVYGGHSD-MVMCMVI--HK---SM--IYTGCYDGSVKAVR WD 8 1560-1600 LNL---------------IQNHRCWWHGC-TLIFGVMEHLQ---QH--LLNDHTSPAQQTFK WD40 Template TGE---------------CL-RTLSGHTS-GVTSVSFSPDG---KR--LVSGSEDGTIKVWD |
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