Input parameters:

  Query = ENSDARP00000102548 (Len=1239)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000102548, Len=1239):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASTMIPYTVNIKLAARTLTGTLNLQNKTAVDWGWQGLIAQGCHSSILIIDPNTAQTIQVLERHKANVVKVKWSRENYHH 80  
WD40-rpts                 (_________________WD 1_________________)   (______________________WD 

Query       81 SLSSPYSLRLASADAAGKIIVWDVVSGMAHCEIQEHSKPIQDMDWLWAQDASRDLLLAVHPPNYIVLWNGDTGTKLWKKS 160 
WD40-rpts      2_____________________)   (___________________WD 3__________________)   (_______

Query      161 YAENILSFSFDPFEPSNLALLTSEGIVFITDFSHSKPPGSGGKKVYIASPHSSPAHSKPAAAQPTGAKKALNKVKVLITN 240 
WD40-rpts      __________WD 4________________)  (_________________WD 5________________)      (_

Query      241 EKPTAEAVTLNDCLQLSYLPSKRNHMLLLYPREILILDLELSQTVGVVAIERSGVPFIQVIPCAQRDALYCLHENGCITL 320 
WD40-rpts      ________________WD 6_________________)                        (_________________

Query      321 RVCRSTTPSPNETVTDPEQNSQELVYDLRSQCDAIRVTKTVRPYRVVICPVNENKAVLVVSDGRVMLWELKAHASKSSSN 400 
WD40-rpts      __WD 7___________________)   (_________________WD 8_________________)           

Query      401 LSSGLPPLYSAVNFCGTPLRQNQKCIPDLSLNSMIGHSLIPGVDSPRPLADQKEVHLKFLLTGLLSGLPLPPFSLRMCPP 480 
WD40-rpts              (___________________WD 9__________________)                (____________

Query      481 LTTKNINHYQPLLAVGTSNGSVLVYNLTSGLLHKELSVHSCEVRGIEWISLTSFLSFATSVPNNLGLVRNELQHVDLRTG 560 
WD40-rpts      _____WD10________________)   (_____________________WD11____________________)(___

Query      561 RCFAFRGERGNDEPAIEMIKVSHLKQYLVVVFRDKPLELWDVRTGTLLREMAKNFPTVTALEWSPSHNLKSLKKKQLAAR 640 
WD40-rpts      _________________WD12___________________)   (_____________________WD13__________

Query      641 EAMARQTTLADAEQSSVESSVISLLQDAESKSESSQGISAREHFVFTDTDGQVYHITVEGNTVKDGARIPPDGSMGSIAC 720 
WD40-rpts      __________)                                               (___________________WD

Query      721 IAWKGDTLVLGDVDGNLNFWDLKARLSRGVPTHRGWVKKIRFAPGKGNQKLLVMYTDGAEVWDTKEVQMVSSIRVGRNVN 800 
WD40-rpts      14__________________)  (_________________WD15_________________)   (_____________

Query      801 YRILDIDWCTSDKVVLASDDGCVRVLEMAMKSASYRMDEQDLTDPVWCPYLLLPRAALTLKAFLLLQPWMDTFTMDITQV 880 
WD40-rpts      _____WD16_________________)                                                     

Query      881 DYKEKDEIKGLIQEQLNSLSNDIKSVLQDPNLSLLQRCLLVSRLFGDESDLQFWTVASHYIQAFAQSAQSNESVPEGQAA 960 
WD40-rpts                                                 (______________________WD17__________

Query      961 ASHLDICHDILCESSFFQGFQLERVRLQEVKRSSYEHTKKCADQLLLLGQTDRAVQLLLETSADNSSYYCDSLKACLVTT 1040
WD40-rpts      ____________)                                               (_______________WD18

Query     1041 ITSSGPSQSTIKLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWTRAAWLAKVRLNAAEGSDVLKRWAEHLCSP 1120
WD40-rpts      ______________)                                                                 

Query     1121 QVNQKSKAMLVLLSLGCFQKVGEMLHSMRYFDRAALFIEACLKYGVMETNDDINKLVGAAFVDYAKLLRSIGLKQGAVHW 1200
WD40-rpts                                                                                      

Query     1201 ASRAGEAGKQLLEDLSQTEGTGTESSPADDTDNSLVNIE 1239
WD40-rpts                                             

18 WD40-repeats found in QUERY=ENSDARP00000102548 (Len=1239):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    12-51       5.14  327.17  0.00242       25.0%     46.80
  WD 2:  Seg  6    55-103      6.87  398.45  0.00027       32.5%     51.08
  WD 3:  Seg 10   107-149      5.66  348.57  0.00125       12.5%     53.73
  WD 4:  Seg 14   153-191      4.48  299.83  0.00566       25.0%     44.72
  WD 5:  Seg 18   194-232      5.40  337.79  0.00174       15.0%     -8.38
  WD 6:  Seg 21   239-278      7.44  422.06  0.00013       15.0%     31.38
  WD 7:  Seg 27   303-346      3.20  246.73  0.02907       15.0%     24.28
  WD 8:  Seg 30   350-389      6.18  369.89  0.00064       20.0%     49.34
  WD 9:  Seg 34   409-451      3.23  248.05  0.02792       12.5%      8.87
  WD10:  Seg 36   468-506      6.20  370.63  0.00063       12.5%     37.14
  WD11:  Seg 39   510-556      5.72  350.95  0.00116       17.5%     52.67
  WD12:  Seg 43   557-601      6.46  381.67  0.00045       15.0%     52.96
  WD13:  Seg 47   605-651      5.62  346.74  0.00132       20.0%     43.12
  WD14:  Seg 53   699-741      6.41  379.65  0.00048       25.0%     45.56
  WD15:  Seg 57   744-783      6.72  392.29  0.00032       22.5%     53.54
  WD16:  Seg 61   787-827      4.53  301.74  0.00533       17.5%     46.56
  WD17:  Seg 68   924-973      4.57  303.32  0.00508       15.0%     -0.29
  WD18:  Seg 69  1021-1055     3.92  276.38  0.01168       17.5%      5.82

Multiple sequence alignment of 18 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   12-51     IK-----L---AAR-----TLTGTLNLQN----------KTAV----DWGW----Q-G--------------------LIAQGC--------HSSILIID
   WD 2   55-103    -A-----Q---TIQ-----VLER--HKAN----------VVKV----KWSR----E-NYHHSLSSPYSLR--------LASADA--------AGKIIVWD
   WD 3  107-149    -G-----M---AHC-----EIQE--HSKP----------IQDM----DWLWAQDAS-R----------DL--------LLAVHP--------PNYIVLWN
   WD 4  153-191    -G-----T---KLW-----KKSY--AEN-----------ILSF----SFDP---FE-P----------SN--------LALLTS--------EGIVFITD
   WD 5  194-232    -H-----S---KPP-----GSGG--KKVY----------IASP----HSSP----A-H----------SK--------PAAAQP--------TGAKKALN
   WD 6  239-278    TN-----E---KPT-----AEAV--TLND----------CLQL----SYLP----S-K----------RN--------HMLLLY--------PREILILD
   WD 7  303-346    CA-----Q---RDA-----LYCL--HENG----------CITLRVCRSTTP----S-P----------NE--------TVTDPE--------QNSQELVY
   WD 8  350-389    -S-----Q---CDA-----IRVT--KTVR----------PYRV----VICP----V-N---------ENK--------AVLVVS--------DGRVMLWE
   WD 9  409-451    YS-----AVNFCGT-----PLRQ--NQKC----------IPDL----SLNS----M-I----------GH--------SLIPGV--------DSPRPLAD
   WD10  468-506    -L-----P---LPP-----FSLR--MCPP----------LTTK----NINH----Y-Q----------PL--------LAVGTS--------NGSVLVYN
   WD11  510-556    -G-----L---LHK-----ELSV--HSCE----------VRGI----EWIS----L-T----------SF--------LSFATSVPNNLGLVRNELQHVD
   WD12  557-601    LRTGRCFA---FRG-----ERGN--DEPA----------IEMI----KVSH----L-K----------QY--------LVVVFR--------DKPLELWD
   WD13  605-651    -G-----T---LLR-----EMAK--NFPT----------VTAL----EWSP----S-H----------NLKSLKKKQLAAREAM--------ARQTTLAD
   WD14  699-741    EG-----N---TVKDGARIPPDG--SMGS----------IACI----AWKG----D-T--------------------LVLGDV--------DGNLNFWD
   WD15  744-783    -A-----R---LSR-----GVPT--HRGW----------VKKI----RFAP----GKG----------NQ--------KLLVMY--------TDGAEVWD
   WD16  787-827    -V-----Q---MVS-----SIRV--GRN-----------VNYR----ILDI----D-W-------CTSDK--------VVLASD--------DGCVRVLE
   WD17  924-973    LF-----G---DES-----DLQF--WTVASHYIQAFAQSAQSN----ESVP----E-G----------QA--------AASHLD--------ICHDILCE
   WD18 1021-1055   T------------------SADN--SSYY----------CDSL----KACL----V-T----------TI--------TSSGPS--------QSTIKLVA

   WD40 Template    TG-----E---CLR-----TLSG--HTSG----------VTSV----SFSP----D-G----------KR--------LVSGSE--------DGTIKVWD