Accession: ENSDARP00000102443 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSDARP00000102443 (Len=443)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000102443, Len=443):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDEEIDTRKINNSFLRDHNYATEADIISTVEFNPTGELLATGDKGGRVVVFQREQESKNQPHRRGEYNVYSTFQSHEPEF 80  
WD40-rpts               (___________________WD 1__________________)                      (_____

Query       81 DYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKISERDKRPEGYNLKDEDGRIRDPSTITALRVPVLRPMDLMV 160 
WD40-rpts      _______________WD 2___________________)(____________________WD 3________________

Query      161 EATPRRIFANAHTYHINSISVNSDYETYMSTDDLRINLWNLEITNRSFNIVDIKPANMEELTEVITAAEFHPNQCNTFVY 240 
WD40-rpts      ___)(_______________WD 4_______________)            (_________________WD 5______

Query      241 SSSKGSIRLCDMRTSALCDNHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYLMTRDYLTVKVWDINMESKPLETYQ 320 
WD40-rpts      __________)                   (________________WD 6________________)            

Query      321 VHDYLRSKLCSLYENDCIFDKFECVWNGTDSVLMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGGKRR 400 
WD40-rpts      (____________________WD 7____________________)   (_________________WD 8_________

Query      401 KDEISVDSLDFSKKILHTAWHPNENIIAVAATNNLYIFQDKVN 443 
WD40-rpts      _______)

8 WD40-repeats found in QUERY=ENSDARP00000102443 (Len=443):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    10-52       7.63  429.82  0.00010       20.0%     43.83
  WD 2:  Seg  6    75-119      4.33  293.41  0.00690       15.0%     40.36
  WD 3:  Seg  9   120-164      5.60  345.83  0.00136       12.5%      8.43
  WD 4:  Seg 11   165-200      6.13  367.91  0.00068       22.5%     49.09
  WD 5:  Seg 16   213-251      6.43  380.42  0.00046       22.5%     40.24
  WD 6:  Seg 19   271-308      5.64  347.52  0.00129       30.0%     42.86
  WD 7:  Seg 23   321-366      5.41  338.20  0.00172       15.0%     42.21
  WD 8:  Seg 26   370-408      4.55  302.50  0.00521        7.5%     24.26

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-52     INNSFLRDH-----NY------ATEADIISTVEFNP--T-GELLATGDKGGRVVVFQ
   WD 2   75-119    SHEPE---F-----DY---LKSLEIEEKINKIRWLPQQN-AAYFLLSTNDKTVKLWK
   WD 3  120-164    ISERD---KRPEGYNL------KDEDGRIRDPSTIT--A-LRVPVLRPMDLMVEATP
   WD 4  165-200    ---RR---I-----FA------NAHTYHINSISVNS--D-YETYMS-TDDLRINLWN
   WD 5  213-251    --IKP---A-----NM------EELTEVITAAEFHP--NQCNTFVYSSSKGSIRLCD
   WD 6  271-308    -PSNR---S-----FF------SEIISSISDVKFSH--S-GRYLMT-RDYLTVKVWD
   WD 7  321-366    VHDYL---R-----SKLCSLYENDCIFDKFECVWNG--T-DSVLMTGSYNNFFRMFD
   WD 8  370-408    -KRDV---T-----LE------ASRENSKPRAILKP--R-KVCVGGKRRKDEISVDS

   WD40 Template    TGECL---R-----TL------SGHTSGVTSVSFSP--D-GKRLVSGSEDGTIKVWD