WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000102382 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000102382 (Len=2031) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000102382, Len=2031): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MADDPDSIPEREMKDFQFRQMKKIRVFESCADLPKERCSLLCVSNRYGLTIAGRERTLKLFWTRDVIAAGRTEGNPNDTV 80
WD40-rpts
Query 81 ECACAVTADMDVCLHHISLSSDELSLCVCGSGDAAELIMHFYDMRSFLNKDGQQKRPFCSFRPPASPNTLVQDLKWSPVD 160
WD40-rpts
Query 161 ASRLAVCLSDGSMMVLDVQDSVTVVAQLPASTGITCGPAVCWSPKGKQVSAGKQDATVVQFTPTLQAKKVIPCPNFYSQD 240
WD40-rpts (_________________WD 1________________)
Query 241 HPVKGIIHCCYCTYTFAVAYAAADGSLETPPELVVVSIPKKDEKRDERYLNFNDLVYGTCTERQHHYYLCHIEDWDLVLA 320
WD40-rpts
Query 321 ASAAAIEVSIIAKQEDKVNWELWLLEDASRAELPVTENSEDTLPVGVAIDYTSQEDISSADEKKVPAAPTLLLLSTDGVL 400
WD40-rpts
Query 401 CPFSLLNLNPGVKQLNATAVPLPLDGERAPAATSTAAPPPATLSFSAPPPVTSSAPPPYTLPFTAPPSATSSFTAPPPST 480
WD40-rpts
Query 481 SSFSAPPPASFSALPTPTSSFSAPPPTSFTAPPPSTSSFSAPPPASFSALPTATSSFSTPPPASFSAPPPANSSAPPTSS 560
WD40-rpts
Query 561 SGFSFSLPPLSSAAPPAFSLGSSSSGFSFNPPKPSSSSAAGFSFSSSTLKEATAAPVPPQRPASMSPIISAPKAPVEPAT 640
WD40-rpts
Query 641 PAVKMNLTDRPVLHIRIRRFPLLSRVSVPPAAPASSTPSAQPVSVKALEKQLQQKKDSDPVMTGILEEIGLFQKELEDLK 720
WD40-rpts
Query 721 SRCRNADFRVGSTDDMRDLRKESENLNTFTLEIKDTTESLHGDISALKTSLLEGFAGAEEARSQSELNQDKDYLQLLYKK 800
WD40-rpts
Query 801 PLDPRRDEQLKEIRRLYQYVKFAMEDVNDVLDVEWEKHLEKKKKQRHMIVPQREALFAALANNLDIINQQKQRLDRLTSD 880
WD40-rpts
Query 881 LHTLRLYRGSALWSLSSRTPSTPTEQSLDSELESLKDALLKASLETSPKAPAKSPAAKMTPVKQSQLRNFLSKRQTPPVR 960
WD40-rpts
Query 961 STAPGIIICCVIMFLQFYEDLDDVSSSSSLSQPVEDPEDSLAVAEEEDEPLPVQLLAPAIPRHPAVVRTPSIQPGFNVQS 1040
WD40-rpts
Query 1041 SPFSRVQSGPINTISTGQSPSNRSIYMPKINMDSADSTALATKTVKHGAPPSEKTTPTTIPASQAAARAALSRHMRIEVV 1120
WD40-rpts
Query 1121 VPAISALLPQTPTSLPGLTQISDIKSHFIYALCVCSASVPAPAAQVVQQVLATVEANKSQTSFQGAVKVSAPLAGPAQAT 1200
WD40-rpts
Query 1201 AANFVFGGAAKLDAGAASSVCEKNAKSFSFSPASSGFSFTSPSQDNNSTQGSGSILFYLELSLYSQFNSVKNSKPYYVTA 1280
WD40-rpts
Query 1281 KISAPPGKFSFAGSTGAKMAFGSVVSEEPFSFSKVSSVISASPEPPKAAKPSTGETLGSFSGLRVGQTEELKESPSGFIF 1360
WD40-rpts
Query 1361 GPPANGSKGFSFNPAQINPTESVTPAESTAEPAKTAPAQAFGSSTFAFKPAEVASPSVKPTFSIPTSSSSSSFPAAAASS 1440
WD40-rpts
Query 1441 FGSLLRAPLPETATNVSAKPEIATSAELAPSADDTQSPAEPCTPKPLTAAESTPPPSTETPIPAESSKPPSPPAAVVSPT 1520
WD40-rpts
Query 1521 PPPSVSPPSESAPLVSEPPLAETVTDTPPETANTSTSAPASTEAPAAPASDKPGSIFAPPPAAAEQTAAGQIYHHSMSAY 1600
WD40-rpts
Query 1601 EFNTVINQSASSSSSVPAVVSTVSPTPVFSSAPSSTSAFGSSAFGSSSASSGFGKPTFGQSAGFGPPAASGSASGFSFGQ 1680
WD40-rpts
Query 1681 PAFSASSSSGFGSPAASASTAAPSSVFGPSTASNAGSFSFGATGSGSTASTGTGLFGQSSTSGFGQPSAGFGQGAVFGSN 1760
WD40-rpts
Query 1761 TTTASSSGFSFGQPSGFGSSTSSSSTSVFGQQASGAGVFGQSESSASGGLFGSNAGNASSGSGFFSGLGGKPSEDAANKN 1840
WD40-rpts
Query 1841 PFGAPAAAGGFGQPINTGPSNLFGSTGAKGFSFGNSSFGEQKPSGSFSSGGGSVAAQGFGSTVQDNTTGFGTAPVFGSPP 1920
WD40-rpts
Query 1921 TFGGSPAFGGTPAFGSAPAFSSPQSGSSGKVFGEGTTASNMGGFGFASPSAPSFGSLANQGAGASFGSVSLQCSERSLQS 2000
WD40-rpts
Query 2001 DCWCLVFAGFGGFGSQNTNQPSSQTFSSWRS 2031
WD40-rpts
 1 WD40-repeats found in QUERY=ENSDARP00000102382 (Len=2031): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 12 184-222 4.17 286.77 0.00847 27.5% 21.67Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 184-222 VVAQLPASTGITC-GPAVCWSPKGKQVSAGKQDATVVQFT WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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