WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000102332 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000102332 (Len=1193) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000102332, Len=1193): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MASPVESAVVKSAVLVAPITALEFLGEDFLLTGEGPILSVYSLQASPKKCASINVLQNYRIHGIRPYKKHQSGGIPFSGA 80
WD40-rpts (________________WD 1________________)
Query 81 SSASDNSYKGDIIVFGGKGVRLVSFESEGQCLKLIGPLLELQDWVLDIHCFKRQPHSLLGISLAHNAIMLLEAESGNIIS 160
WD40-rpts (_________________WD 2_________________) (________________WD 3_____________
Query 161 FYSCVETCLLYSALMVGPNWDSVVLVGGTVFNQLVLWRPAGTKLSGQSQVERRLLGHSGVIFSLCYLQESGWLASASDDR 240
WD40-rpts __)(_______________WD 4______________) (_________________WD 5___________
Query 241 SVRLWSVGTLGGDAGCGKESPTCLRVLYGHQARVFCVKLTPSRLFSAGEDGACLLWEWGGEGKVGCAFRGHKSGGVRALA 320
WD40-rpts _____) (________________WD 6_______________) (__________________
Query 321 VSEGSISCRAGWVATGGADGGVRLWRVAEGKKISEETQEETQLDLGFRGHGCPKVVRLVGEGESNAILVCTDQGEVCLSQ 400
WD40-rpts __WD 7___________________)
Query 401 GDIWDVIWQGGSEFQSYCVMEVASIQVQNSDCIVQVCAVGNLNGGVQVFLVGQPGVGVFLRAGEGKVHSVLWVKGLFGES 480
WD40-rpts (__________________WD 8__________________) (____________________WD 9__
Query 481 GNVCLLASGSEGLVYRWTINVTEDKSGLHIKEEALLPFLLPPCAKRWLTAAVTLSQRNGFCLCGDRRGSLLLYMERENND 560
WD40-rpts _________________) (_________________WD10________________)
Query 561 RINEGEESRIDSQDQETENRQTELVSSLSPISTLYGVHGKQGVTSVCEYQDLCYSTGRDGSVRILTVEESTLKVRRVHRA 640
WD40-rpts (_________________WD11_________________)
Query 641 CKGMDWLEMVLFLGSDGPERMLNKTIVKRTNDTGRESIAEARFVMVGFHSVHFVIWDPHRQEKLLSVTCGGGHRSWAFKR 720
WD40-rpts (____________________WD12___________________)
Query 721 PISTHIDTQTQALRQGTLVFIKQGAVMASRSLMSTDTSVNGHTLKEGLHGRGISCVCHLGSLSGDLSELWEVFVTGGEDT 800
WD40-rpts (__________________WD13____________
Query 801 TVGVLAVCPQSGIVKVLAVLTDHISIVRALAAIRRGDMNERERNNGMETSVLSSLVFSAGGRAQLQCYRLLIHLDEQQSQ 880
WD40-rpts _____) (_________________WD14________________)
Query 881 PICQVTQIAGHRLDEQWERKRNRHKTVKMDPETRYMSIAVVQNESEGVLLALGCSDGAVRLFSVNESSRSVDVLWECFYH 960
WD40-rpts (_________________WD15________________) (______________
Query 961 QRCVLSVATCKLEDSQGRKLLLLFSATTDGCISVWDLTAVLNSKASVSWQGPSVPFFSIPVHQSGVNTLALSPRTEKGQT 1040
WD40-rpts _________WD16______________________) (_____________________WD17__
Query 1041 EDNVISLASGGDDGQLSLLRIKIDQAEQENGVASLQLLSHWSIPLAHSSPLTGLCLLSPALLASTSPDQRMCLWSVESDG 1120
WD40-rpts ___________________) (________________WD18_______________)
Query 1121 LRPLQVRFSHIADAAGLWAWRSEGQEGGAWIVVCGQGLQLFQLTEKEIDEAENGRAEGEERKKVMFSHQCSRT 1193
WD40-rpts
 18 WD40-repeats found in QUERY=ENSDARP00000102332 (Len=1193): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 5-42 4.40 296.41 0.00629 12.5% 44.79 WD 2: Seg 7 86-125 7.34 417.78 0.00015 20.0% 44.16 WD 3: Seg 11 127-163 6.32 375.60 0.00054 7.5% 47.72 WD 4: Seg 15 164-198 4.90 316.98 0.00333 17.5% 36.52 WD 5: Seg 18 208-246 8.67 472.79 2.6e-05 25.0% 51.35 WD 6: Seg 22 261-297 7.11 408.38 0.00019 37.5% 49.27 WD 7: Seg 26 302-346 6.99 403.49 0.00023 30.0% 47.23 WD 8: Seg 36 409-450 6.51 383.48 0.00042 12.5% 51.52 WD 9: Seg 39 454-498 5.64 347.66 0.00128 17.5% 56.23 WD10: Seg 43 502-540 4.94 318.58 0.00316 12.5% 13.18 WD11: Seg 50 587-626 8.14 450.91 5.2e-05 17.5% 53.21 WD12: Seg 56 653-697 4.95 319.32 0.00309 15.0% 35.91 WD13: Seg 65 766-806 5.87 356.94 0.00096 30.0% 31.52 WD14: Seg 68 814-852 6.81 396.17 0.00028 17.5% 27.77 WD15: Seg 74 905-943 7.22 412.88 0.00017 15.0% 40.02 WD16: Seg 78 946-996 5.94 360.06 0.00087 32.5% 49.48 WD17: Seg 82 1013-1060 5.60 345.84 0.00136 27.5% 49.81 WD18: Seg 87 1079-1115 5.79 353.96 0.00106 20.0% 45.44Multiple sequence alignment of 18 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 5-42 VE-----SAVVKSAVLV-AP------ITALEF------LG-------EDFL---------LT--GEGPILSVYS WD 2 86-125 NS-----YKGDIIVFGG-KG------VRLVSF------ES-------EGQC---------LKLIGPLLELQDWV WD 3 127-163 --------DIHCFKRQP-HS------LLGISL------AH-------NAIM---------LLEAESGNIISFYS WD 4 164-198 CV-----E-----TCLL-YS------ALMVGP------NW-------DSVV---------LVGGTVFNQLVLWR WD 5 208-246 -S-----QVERRLLGHS-GV------IFSLCY------LQ-------ESGW---------LASASDDRSVRLWS WD 6 261-297 -P-----TCLRVLYGHQ-AR------VFCVKL------TP-------SR-----------LFSAGEDGACLLWE WD 7 302-346 -G-----KVGCAFRGHK-SGGVRALAVSEGSI------SC-------RAGW---------VATGGADGGVRLWR WD 8 409-450 QG---GSEFQSYCVMEV-AS------IQVQNS------DC-------IVQV---------CAVGNLNGGVQVFL WD 9 454-498 -P-----GVGVFLRAGE-GK------VHSVLWVKGLFGES-------GNVC---------LLASGSEGLVYRWT WD10 502-540 -T-----EDKSGLHIKE-EA------LLPFLL------PP-------CAKR---------WLTAAVTLSQRNGF WD11 587-626 SL-----SPISTLYGVH-GK------QGVTSV------CE-------YQDL---------CYSTGRDGSVRILT WD12 653-697 LGSDGPERMLNKTIVKR-TN------DTGRES------IA-------EARF---------VMVGFHSVHFVIWD WD13 766-806 EG-----LHGRGISCVCHLG------SLSGDL------SE-------LWEV---------FVTGGEDTTVGVLA WD14 814-852 -V-----KVLAVLTDHI-SI------VRALAA------IR-------RGDM---------NERERNNGMETSVL WD15 905-943 -K-----TVKMDPETRY-MS------IAVVQN------ES-------EGVL---------LALGCSDGAVRLFS WD16 946-996 ES-SRSVDVLWECFYHQ-RC------VLSVAT------CKLEDSQGRKLLL---------LFSATTDGCISVWD WD17 1013-1060 -S-----VPFFSIPVHQ-SG------VNTLAL------SP-------RTEKGQTEDNVISLASGGDDGQLSLLR WD18 1079-1115 -------SHWSIPLAHS-SP------LTGLCL------L--------SPAL---------LASTSPDQRMCLWS WD40 Template TG-----ECLRTLSGHT-SG------VTSVSF------SP-------DGKR---------LVSGSEDGTIKVWD |
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