Accession: ENSDARP00000101547 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSDARP00000101547 (Len=1976)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000101547, Len=1976):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATLVDTAETPAPFGGVGSLRSTASPTASTQHFDEGKYYLLVVIGELVTDEHLKCAIADIEKGIRSWDTNLIDCNLDQEL 80  
WD40-rpts                                                                                      

Query       81 KLFVSRHSARFSADVRGQKILHHKSNVLETVVLINPSDEAVSTEVRLMVSDTAHHKLLVLAGQCFENTGELILQSGSFSL 160 
WD40-rpts                                                                                      

Query      161 SSFIDIFTDQEIGELLSTVHPANKASLTLFCPEHGDWKNSNLDKHNLQDFIYMKLNSPTILPEMEGLSEFTEYLSESVEI 240 
WD40-rpts                                                                                      

Query      241 SSPFDMLEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSDRKSCFWKLVRHLDRVDSVLLTHIGDDNLPG 320 
WD40-rpts                                            (____________________________________WD 1_

Query      321 INSMLQRKIAELEEEQSQGSTANSDWTKNMISPDIGVMFANMPQNLENLEPNYRIRRNAEEAAFTLQYLNKLSLKPEPLH 400 
WD40-rpts      __________________________________)                                             

Query      401 RSIGNTVEPIILFQKMGVGKLEMYVLNPAKNSKELQFFLKEWSGSDKDKATILLPNGKESELPVSYLSSISSLIVWHPAN 480 
WD40-rpts                                                                                      

Query      481 PSEKIVRVLFPGNSTQNHILEGLEKLKHLDFLKYPVITQNELNLNLAPTLKQAKMKHKTDSKESLKSTSKPSPTKNLHKE 560 
WD40-rpts                                                                                      

Query      561 SREETTEKLKTVKDIKSKVEQTHKTDTPEKKKVEIKPKTIKKESKKSVEKTETVKRDVRKDSLLKESRKDEKKESLKDSK 640 
WD40-rpts                                                                                      

Query      641 EPMKDLRKTGSLKKNAPSTPDVKKPAPKPKVAARGKSPGSPARSKDKAKSKPTKKDAGESVAAPSVSGATVEEPTVEDSA 720 
WD40-rpts                                                                                      

Query      721 TDVLEAERSLMSSPEDLTKDFEALKAEEMAEDDEVLSQTKIDDSNQEEVIRHEEITHCKESPEAAESLDEGIATTEAEEE 800 
WD40-rpts                                                                                      

Query      801 CGGTPGELEPNQKSNGTSEKFEDEGTGLEESSELGDYEEKGETEEVDEQDRAISTLKDEQAELETKEGANYGTDEPEYLD 880 
WD40-rpts                                                                                      

Query      881 KETKLQCFDVTTPPKLTAPLSPADSVHDETLPAGSESEAASDDENRDEPPEEYTTSGHTQSTIEISSVPTPMDEMSTPRD 960 
WD40-rpts                                                                                      

Query      961 VMSDETTNDESDSPSQDFVRYGITTEHERKKLSPLQDVPELDHSKSDATEGHDYHVSASTISPPSSLEEDKSVKDFSVKD 1040
WD40-rpts                                                                                      

Query     1041 TFSFDSSRLTTTTNLPFVRSPSVDQNVNIDLVHAGVSSPIELGTTLAGISKGLESYSPDEKTLEGPLSPQSSGHTPFYQS 1120
WD40-rpts                                                                                      

Query     1121 PVEEKAGTLPSEKTSEAQGPVIVDITSDKEYSPREASPIDEAVPVSQPGKKQSPIYEAHLSTNFEFDSKLPSQTDNSDKK 1200
WD40-rpts                                                                                      

Query     1201 IATDDNSSVISATSLPPSKIESLSETKHFTTFKEDSKMSISEGTTSDKSGTPVDEVVADDTFSHIASASTASLATSSLPE 1280
WD40-rpts                                                                                      

Query     1281 PTTDDVSPSLHAEVGSPHSTEVDDSFSVSVVQTPTTMQEAEVSPSKEDSPRPMSISPDVSPKTAKLRMPEQETKSPEKLS 1360
WD40-rpts                                                                                      

Query     1361 AGCEQESPEHSFALDFSKQSPDHPSVGGMQSTATENGPTEVDDSPLDEVGSMGEQHRPGEAGDKAMFFKDSDSTQAASAS 1440
WD40-rpts                                                                                      

Query     1441 PSDASQSTPSVTTPCQIAEPREVSPDLDNLSESVTPKQSPSKQSPLSLDSSLVLGRPSISHEEVNKGKLSPNSFYEESAM 1520
WD40-rpts                                                                                      

Query     1521 DKSEDTQNLERTPPKASSPLSPTESLCFSQKTEELKLGSETTTFTGSKSPTSPKMSPPAQLSPSSTQTDTLDKFSTSSSS 1600
WD40-rpts                                                                                      

Query     1601 YSYSCQNVESTQICDGGSIGPETSKACHSQSRAEVDLCLVTSCEYRHPKTELSPSFINPSPLEYFMTEEPNLGEEKPLAK 1680
WD40-rpts                                                                                      

Query     1681 SGEGPPPPEEKQQTKQCEETPPTSVSESAPSQTDSDVPPGTEECPSITADANIDSEDDSETLPTDRTITYRHADPPPVTP 1760
WD40-rpts                                                                                      

Query     1761 RDPAPTPPHPDACMVDPEVLKAEEASGKPKKNISSKTKPSATKSLSKTSAIKESKVSSPKKSTEDKDAKNATNTSASRGV 1840
WD40-rpts                                                                                      

Query     1841 KNSTSGNGSTKSSGGTSVPNCPTMYMDLVYIPNHCNAKNVDAEFFKRIRSSYYVVSGNDPTAQEPSKAVLDALLEGKSQW 1920
WD40-rpts                                                                                      

Query     1921 GNNMQVTLIPTHDTEVMREWYQETHEKQQDLNIMVLASSSTVVMQDESFPACKIEL 1976
WD40-rpts

1 WD40-repeats found in QUERY=ENSDARP00000101547 (Len=1976):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   279-355      2.92  235.48  0.04097       22.5%     12.33

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  279-355    NGFNMLINGGSDRKSCFWKLVRHLDRVDSVLLTHIGDDNLPGINSMLQRKIAELEEEQSQGSTANSDWTKNMISPDI

   WD40 Template    TGECLRTLSGHTSG------------VTSVSFSPDGKRLVSG----------------------SED---GTIKVWD