Input parameters:

  Query = ENSDARP00000100292 (Len=1270)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000100292, Len=1270):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADNVPCGLLEACVLLGVSNERLKELCPGKDADVLVEAEVLQVHAPPFITKDRSCNGGVDQGVAPAFSRVQKRRSFKKKK 80  
WD40-rpts                                                                                      

Query       81 RERPVSTLSNSSQASESEELSVPQNIDLIALPQLCFPDGLRITNESREDSYHFLVFTDVFGNQTHGVVAQYCRPVQFQQD 160 
WD40-rpts                                                                                      

Query      161 NVIYANGHRTNEHKRLYTTFSICVISKYPYYNALRDCLSCFLFQMKTSRVSDFDEQVKEFSAKLALVPIPPSGPLHVVFN 240 
WD40-rpts                                                                                      

Query      241 LRPLQIELPSRLDVDRPVMDLDLHLPFLCFKPKQILQIISSILMEQRVVFLSTDWAKLTLVSECFMIFIHPLRWQHPFVP 320 
WD40-rpts                                                                                      

Query      321 VLSRQMLDFIMAPTAYLMGCHTYHFQEVAEEIEDLVLIDIDQGTVSSSTSDRFDLPDVPLAARDCFIFRCGGLQLHYDLD 400 
WD40-rpts                                                                                      

Query      401 VCGSSSQTDVNDLRAHRRLWQRKLNSSILNISMELIVNIFSEVCDFLNYEHRVFNSEEFLRSRDSTDSAFYRKVLDTHIF 480 
WD40-rpts                                                                                      

Query      481 HSFLRERLNRKNDAFTRMQLNIRSETRRLKIMTESPRRPTMEEINRKHRAENGLNKRLGMSMPNLADSRCLTVPIRQMSM 560 
WD40-rpts                                                                                      

Query      561 MSVRMPLQMGSWSPIKPVKTFKLPEFPPPLAYHYVQNYYHDLIGQLDRSISSASPDDSALLARYYYLRGLVNSVTGRHVD 640 
WD40-rpts                                                                                      

Query      641 ALADFQSLYKTDMEIFPAQLLNTLVEALPVEEKRIAERRTDLKRLMSRVRRENEKDRARLVDGGTVKRFELPKKHLQKED 720 
WD40-rpts                                                                                      

Query      721 FVRRVQESGIVKDLETIKRLFEALTLGQVKQVDPETFRFFYNFWKETEAAAQDVDLPAVVLEHLENDECVYKVSSSVKTS 800 
WD40-rpts                                                                                      

Query      801 HGVGKIAMTQRRLFLLTEGRPGYVEITKFRDIEDVRISSAPFLLLRIPSLKIRTSLRRESFEANLKSECDLWHLMIKEMW 880 
WD40-rpts                                                                                      

Query      881 AGRKMADQHKDPQFMEQALTNALLMDAVVGSLQSQKAIYAATKLAYFDKMKSEVPMMVPKTTSDTLKHKINPSLDQTSPQ 960 
WD40-rpts                                                                         (____________

Query      961 AVDVLLYTPGQLGVSDVDGGGNPKLWCALSDGKLLVFDAASWSMQHNSVQVGTSRLTCMLAVNEQQLWIGSKDSFIYIIN 1040
WD40-rpts      _____WD 1_________________)              (_________________WD 2________________)

Query     1041 PRSVSCNKQLTEHRCELTGLALEERADKFSQTVAYSCSEDCNVIVWDVSSLQVRRQFRVSCGRLQSMHVHNGMLWCCGRD 1120
WD40-rpts         (___________________WD 3___________________)   (________________WD 4_________

Query     1121 CVLEVRRNGSVHRRISLPDHLLSSPKGFSSFLLFNESEQLWAGFADAGELCVWHCRDISKPFIRIQLKDCAAVTCMIRVK 1200
WD40-rpts      ______)(_____________________WD 5____________________)            (_____________

Query     1201 NQIWVGGYNGSVTDRRVRGKIYIVNTDRYTVEKELQAHADAVQTMCSAEDRYVLSGAAQDDGKIGIWKVE 1270
WD40-rpts      ____WD 6________________)   (_________________WD 7_________________)  

7 WD40-repeats found in QUERY=ENSDARP00000100292 (Len=1270):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 19   948-987      5.87  357.06  0.00096       12.5%     21.98
  WD 2:  Seg 22  1002-1040     6.00  362.50  0.00081       12.5%     48.83
  WD 3:  Seg 25  1044-1087     7.16  410.25  0.00018       27.5%     44.67
  WD 4:  Seg 29  1091-1127     4.33  293.60  0.00686       12.5%     51.29
  WD 5:  Seg 33  1128-1174     4.98  320.37  0.00299       27.5%     48.81
  WD 6:  Seg 38  1187-1225     4.34  293.82  0.00681        7.5%     32.32
  WD 7:  Seg 42  1229-1268     6.73  392.81  0.00032       22.5%     43.04

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  948-987    HKINPSLDQ------TSPQAVDVLLY-----TPGQLGVS-DVDGG-GNPKLWC
   WD 2 1002-1040   -WSMQHNSV------QVGTSRLTCML-----AVNEQQLW-IGSKD-SFIYIIN
   WD 3 1044-1087   -VSCNKQLT------EHRCELTGLALEERADKFSQTVAY-SCSED-CNVIVWD
   WD 4 1091-1127   -LQVRRQFR------VSCGRLQSMHV-------HNGMLW-CCGRD-CVLEVRR
   WD 5 1128-1174   NGSVHRRISLPDHLLSSPKGFSSFLL-----FNESEQLW-AGFADAGELCVWH
   WD 6 1187-1225   LKDCA-AVT------CMIRVKNQIWV-----GGYNGSVT-DRRVR-GKIYIVN
   WD 7 1229-1268   -YTVEKELQ------AHADAVQTMCS-----AEDRYVLSGAAQDD-GKIGIWK

   WD40 Template    TGECLRTLS------GHTSGVTSVSF-----SPDGKRLV-SGSED-GTIKVWD