WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000100187 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000100187 (Len=2065) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000100187, Len=2065): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEWLAPALERDLGIDQRQTAHSQRPNELVVLVPTRWVMALRNKRVTRCAKYESFSEGEICTLLQRSQMKLPSGWTRVCIQ 80
WD40-rpts
Query 81 GLRKRKLGYRFARETGCHGEGLSQDSFMTLMQGVSQSNFRNLWHEAYMTHVQPYADSVEQTPVLALDAVRQALQKLFCSN 160
WD40-rpts
Query 161 FISTDRVSPSLSPAKEKEKDCPFLSTCSAPKQSTESLCPNVLPAECLLESEEVLYVVFPYTQYTVHDIVTYSPAKLANSN 240
WD40-rpts
Query 241 AKILFILYQLLIAMRECHASGLLCGELSLLDIAVDEQLCSRLKISLAHYEKFKEYRDAVPYALQNKVPMSVSTKDNHNNG 320
WD40-rpts
Query 321 VSGQLCRNCQDELKSLVLDWVNGQVSNFQYLMELNRLAGRREGDPNYHPVLPWVVDFTVPYGRFRDLKKSKFRLNKGDKQ 400
WD40-rpts
Query 401 LDFTYEMTKEALAAVSGSGGSNYPPDLGGPVVPGGPGQSDHLHVPHHISDVLSDITYYVYKARQTPKSVLCSHVRSQWEP 480
WD40-rpts
Query 481 NEYPASMERIQSWTPDECIPEFYRDPSIFRSIHPDMPDLDVPPWCNSYEEFIAVHRQLLESREVSQQLHHWIDLTFGYKL 560
WD40-rpts
Query 561 SGKEAIKAKNVCLHLVDNHTHLTSYGVVQLFDHPHPPRLALYQYAPPEPPHFGRVNVTTWQIPPLETTMDGVDGLVPEAT 640
WD40-rpts
Query 641 GCESSGWSVVGRDEELEQAIEALDLSGSSSSTSASVSIPVVGSAAGKTSGETIGLVVSPSHGSFPGEATGNVTNTLGSGI 720
WD40-rpts
Query 721 RTAMLHRAASVSKKPEASNLEDFKISLPDGFKPLQPLEELEKLNTFLVKGLHSEIEHTMDLGINKKDLRSVPKVPLSFTD 800
WD40-rpts
Query 801 LFQRDMQALGVLIAEIFYSSKLRGLRPETHLRDRFQAVLKLCSTNLRDVPLPLHHALDTLLQVHKHCLKTETIIMHPQGL 880
WD40-rpts
Query 881 PFLFKYDPICEGLPPPNPWQLLSPIVSPLPFPEYFPTLHKFIFSYHSKMESINNIQGRDIVFNLWQQLETLLKGDITTEG 960
WD40-rpts
Query 961 LEILLPFVLSLMSEESTAVYAAWYLFEPVSRVLGPRNASKYLIKPLVGVYENPRCLRGRFYLYTDCFVLQLIVRLGLQVF 1040
WD40-rpts
Query 1041 LSSLLPHVLQVMTGFESCNTAAGTEWEGMKVLRGAAGALDEEEEEYECDDRRSSNATSSGKVGGGSGGGSGGVGVVGDQG 1120
WD40-rpts
Query 1121 LVDYSSGISLNDQVFLNEGEDFQNGFYVNNSASGATTVGTKQQNQSTANKDQDQESLSVGKLSDKSSASEVSIGDRASLK 1200
WD40-rpts
Query 1201 SADSSQDLKQASDGEDGGELEDEEETVEDREITVQRVPSLEMTLSVCTEESEATVATLEGDVMNGIVQEDGEKNMEEEET 1280
WD40-rpts
Query 1281 EHDPLEDSEEKEHKILLDTVCKTVRWLSAKLGPTLTSRFIARNLLRLLTSCYIGLDKHQFMLSVNEENSLECVGSVYEKK 1360
WD40-rpts
Query 1361 PVVGDQTARPVLECLIYIAHLYGEPVLTYQYLPYIGYLVSPPSSCRLNTRKEAGLLGAVVLTQKIIVFLSDTTLMDMLMK 1440
WD40-rpts
Query 1441 INQEVLLPLLDLLTSTKMGFPSGVQTRSAVCLKTLSLMALICLRIGREMVQQHMAETLSRFFQVFSLLQFLQNQIGSAPR 1520
WD40-rpts
Query 1521 REVAECTYLDLRIPDGAELTIELGVLEELQAVFNPEMAYASYIPFYCLIGDSGIRKLVTNHELVWSLAQSYHERASPGSP 1600
WD40-rpts (________
Query 1601 ESNPVGGQRASAVGLSPSMGRQMSRSPFPAPSSTSTPLGGDILPESGTFGSHLVGNRIQVTRDTEACGSPNLSSLETWTH 1680
WD40-rpts _________WD 1________________)
Query 1681 GRPYGSNAPPMSLATTALSSAGPSFSHSSYSWVMGPTPEDSALKQDLPRSSRSLQGNWLAYWQYEIGLNQQDSHFHFHQI 1760
WD40-rpts
Query 1761 RLQSFIGHSGTAKCLAPLAGEDYFLSGSKDKTVRLWPLYNHGDGTREVEPRLTYTEHRKSIFYVGQLEALQEVVSCDGTV 1840
WD40-rpts (_______________WD 2______________) (________________WD 3____________
Query 1841 HLWDQFTGKNIRCNEPLDGKNPITAVTTMPAPHCSVVFASADSVLRFIDPRKPGLQHEFRLAYSNLSAGLIRCLAVSPGG 1920
WD40-rpts ___) (_________________WD 4________________) (_______________WD 5
Query 1921 RTIAAGFSTGFIVLLDARTGLVLRGWPGHEGDILQMKAAEGNLLVSSSSDHTLTVWKDVEHKPLHQYRTPSDPIHAFDLY 2000
WD40-rpts _______________) (________________WD 6________________)(_________________WD 7_
Query 2001 GAEIVAGTVANKIGVYSILDSTASLAGSTKLSTENFRGTLTSLSVLPTKRLLLLGSDNGAIRLLA 2065
WD40-rpts ________________) (_________________WD 8________________)
 8 WD40-repeats found in QUERY=ENSDARP00000100187 (Len=2065): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 19 1592-1630 3.77 270.35 0.01407 15.0% -14.49 WD 2: Seg 23 1763-1797 7.39 419.85 0.00014 20.0% 46.37 WD 3: Seg 26 1808-1844 5.20 329.47 0.00226 27.5% 45.34 WD 4: Seg 30 1851-1889 5.55 343.88 0.00144 17.5% 42.54 WD 5: Seg 35 1901-1936 6.20 370.74 0.00063 20.0% 45.59 WD 6: Seg 38 1940-1977 6.85 397.61 0.00027 35.0% 52.55 WD 7: Seg 42 1978-2017 5.04 322.65 0.00279 20.0% 43.91 WD 8: Seg 46 2027-2065 5.96 360.89 0.00085 25.0% 46.26Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1592-1630 -HERASPGSPESNPVGGQRASAVGLSPSMGRQMSRSPFPA WD 2 1763-1797 -----QSFIGHSGTAKCLAPLAGEDYFLSGSKDKTVRLWP WD 3 1808-1844 -VEPRLTYTEHRKSIFYVGQLEALQEVVSC--DGTVHLWD WD 4 1851-1889 -IRCNEPLDGKNPITAVTTMPAPHCSVVFASADSVLRFID WD 5 1901-1936 ----LAYSNLSAGLIRCLAVSPGGRTIAAGFSTGFIVLLD WD 6 1940-1977 -GLVLRGWPGHEGDILQMK-AAEGNLLVSSSSDHTLTVWK WD 7 1978-2017 DVEHKPLHQYRTPSDPIHAFDLYGAEIVAGTVANKIGVYS WD 8 2027-2065 -GSTKLSTENFRGTLTSLSVLPTKRLLLLGSDNGAIRLLA WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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