Input parameters:

  Query = ENSDARP00000099953 (Len=1076)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000099953, Len=1076):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 PQPPPSVQDADDNDRRTDAETDGKPIRRIKKGKNKAANDSSQQKEQTETEDDYLRAYQHQISQEEETAGKKSTRKKAAEK 80  
WD40-rpts                                                                                      

Query       81 LEEKQLLNNELEKKKKKAKSSKHDAERSQAEVSAENQTEIIQDDVEEFKEDTVKPKVKKKKKRKEVPVEEEQTEEKPAFD 160 
WD40-rpts                                                                                      

Query      161 DSLVLGVYIHRTDKLKTDLMVSHPMVKVHVVDEVTGQYVKKEDSHRHVSSFYEQENIEHILPIITQPFDFKKHKTTVPEW 240 
WD40-rpts                                                                                      

Query      241 EEQIIFNERFGYFLQDDDESPRVMLLFEILDFISMEEARTNVSVDRHERGFRKIAWAFLKLVGTNGVLNIDTKLRLQLYC 320 
WD40-rpts                                                                                      

Query      321 PPPRAKKVPQTVEVFQWWSKYPRNKYTSTLYVTVKGLKPPEHVDPGIRSMMALQQERGSTSYSELNSEMTNKTSTQIQES 400 
WD40-rpts                                                                                      

Query      401 KAETMKWSRMPGQVCRIPNKPMHSFRGGQMGCFTLCFSHDGRALAAACADRDAFPIIIYEIPSGKVLSSFNGHLSVVYDL 480 
WD40-rpts                        (__________________WD 1__________________)   (________________

Query      481 CWSRDDKGLLTASSDGTVRVWNVERLQTLAHKTLPHPSFVYCAKFHPQAQSLVATGGYDGVLRVWNVDVQDVNGQLLQEF 560 
WD40-rpts      _WD 2________________)     (_________________WD 3________________)       (______

Query      561 DGHKTFINTLCFDPEGSRMFSADNSGLIIVWGTKVMPGSRRGATSQWSIEREIKEADLNGISINSLEVHPNGRRLLIHAK 640 
WD40-rpts      ___________WD 4________________)                 (_________________WD 5_________

Query      641 DSVLRVMDLRILAVKKYIGATNYRDRINSTFTPCGSFIFAGSEDGLAYVWNSETGDQVAVYSELCYSSALRAVAFHPHEN 720 
WD40-rpts      _______)(___________________WD 6__________________)   (___________________WD 7__

Query      721 MVAFCCFGQNQPIHLYLYDRKVAQMEVESLRGWSRSENLDSKTGRISSEFMSIQNPTATSMDRFANTARMSLKMQRVKQK 800 
WD40-rpts      ________________)(_________________WD 8_________________)   (__________________W

Query      801 LDSVLVKMEPHRSSSNVDMYEQGGMSSLGRSIEGLNSYLPPPSLLSPHSKLQMSSSLSAQLIPQATLTSHTSGYSQAGQP 880 
WD40-rpts      D 9_________________)(___________________WD10___________________)               

Query      881 IRRAPSLRQQKSFHDYEFSQQVETDLGQAHQTVVSLYEYRANRSDELSMRRGDVVHVLYKDNDSWWFGRLVSGQEGYFPA 960 
WD40-rpts         (_______________WD11______________)  (_________________WD12________________) 

Query      961 SYVADEGNFDEELSRALEAQPSLIDQPEEAEHATPVQMSAAISASGELKIISELDTDAEASSTTRKKKKKKVKRIEVPSE 1040
WD40-rpts                                                                                      

Query     1041 DLPPSSGSSRRRRPLPKLGQANGAFEGEGLNLRDLV 1076
WD40-rpts                                          

12 WD40-repeats found in QUERY=ENSDARP00000099953 (Len=1076):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14   419-460      6.11  367.15  0.00070       22.5%     51.82
  WD 2:  Seg 18   464-502      9.83  520.61  6.0e-06       40.0%     54.54
  WD 3:  Seg 22   508-546      7.18  411.38  0.00018       30.0%     46.62
  WD 4:  Seg 25   554-592      9.04  488.22  1.6e-05       32.5%     54.03
  WD 5:  Seg 29   610-648      7.18  411.16  0.00018       20.0%     53.56
  WD 6:  Seg 33   649-691      6.83  396.59  0.00028       30.0%     51.43
  WD 7:  Seg 37   695-737      4.78  312.14  0.00386       17.5%     56.29
  WD 8:  Seg 41   738-777      4.08  283.14  0.00948       17.5%     16.67
  WD 9:  Seg 44   781-821      3.84  273.34  0.01283        5.0%     21.44
  WD10:  Seg 47   822-865      5.06  323.74  0.00270       15.0%     28.25
  WD11:  Seg 52   884-918      6.03  363.69  0.00078        5.0%     22.49
  WD12:  Seg 54   921-959      3.31  251.20  0.02535       12.5%     29.71

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  419-460    -NK-P----MHSFR--GGQMGCFTLC--FSHDG--RAL-AAAC--ADRDAFPIIIYE
   WD 2  464-502    -GK-V----LSSFN--GHLSVVYDLC--WSRDD--KGL-LTAS--SDG---TVRVWN
   WD 3  508-546    T---L----AHKTL--PHPSFVYCAK--FHPQA--QSLVATGG--YDG---VLRVWN
   WD 4  554-592    -GQ-L----LQEFD--GHKTFINTLC--FDPEG--SRM-FSAD--NSG---LIIVWG
   WD 5  610-648    -ER-E----IKEAD--LNGISINSLE--VHPNG--RRL-LIHA--KDS---VLRVMD
   WD 6  649-691    LRILA----VKKYI--GATNYRDRINSTFTPCG--SFI-FAGS--EDG---LAYVWN
   WD 7  695-737    -GD-Q----VAVYSELCYSSALRAVA--FHPHE--NMV-AFCCFGQNQ---PIHLYL
   WD 8  738-777    YDR-K----VAQME--VESLRGWSRS--ENLDS--KTG-RISS--EFM---SIQNPT
   WD 9  781-821    -MD-R----FANTA--RMSLKMQRVK--QKLDSVLVKM-EPHR--SSS---NVDMYE
   WD10  822-865    QGG-MSSLGRSIEG--LNSYLPPPSL--LSPHS--KLQ-MSSS--LSA---QLIPQA
   WD11  884-918    ----------APSL--RQQKSFHDYE--FSQQV--ETD-LGQA--HQT---VVSLYE
   WD12  921-959    -AN-R----SDELS--MRRGDVVHVL--YKDND--SWW-FGRL--VSG---QEGYFP

   WD40 Template    TGE-C----LRTLS--GHTSGVTSVS--FSPDG--KRL-VSGS--EDG---TIKVWD