Input parameters:

  Query = ENSDARP00000099918 (Len=1070)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000099918, Len=1070):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQVTDIGSREDGKIWHRKSVSKNGVLATVIRNSSARQTKTVRFLQVAFDTTGESFLAGDHHGNIYVFDICRNRFKLVQKT 80  
WD40-rpts                                   (_________________WD 1________________)  (_________

Query       81 GQACTALAFNLRRTTEFLVALADYSIKCFDKDTRQLVSWMRGHEGAVSSLSIHSSGSFAISTSSDTAQLWSLDTFQRKRK 160 
WD40-rpts      ________WD 2_________________)   (________________WD 3________________)   (_____

Query      161 LNVRQSVGIQKVFFLPHSNTILSCFSDNSIFAWETDTLFCKYQLPVPQNGPRIHYRTFAVTQNGKTLAAAGRSNLVHLWC 240 
WD40-rpts      ____________WD 4_________________)(____________________WD 5____________________)

Query      241 LDSQQLIRVIQMPSNVKTVRYLDFLPDSFDDGSNQTLGVLSQDGIMRFVNIQSCKQLFLIGSHEDAISSATVCPKGHHIV 320 
WD40-rpts      (______________________WD 6______________________)(__________________WD 7_______

Query      321 AVMDSGAIKIYDVRSLTTEISKPPQPLLKRVTKVNISDGSCLKMKVNTGAGQRAVKTSGRRIQSKLLPPSVSTLDDKEND 400 
WD40-rpts      ___________)                                    (_______________________WD 8____

Query      401 LPNGLSKKRLQALLREFGEYPAKYRMFIWRSLLRLPENHAAFSSLTDKGLHSAFLCLQEQYPIKSHKLQRGLQRVLSALA 480 
WD40-rpts      __________________)                                                             

Query      481 HWAAVFGETDYVPLLAFPFVKLFQNNPLICFEAVATVIVNWCQHWFEYFPNPPLNVLSLAENVLAHHDKELLQHFVACGV 560 
WD40-rpts                                                                                      

Query      561 TSQLYAWPLLETLFSEVLMREEWLKLFDNVFSNHPSFLLMAVVAYVTCCRAPLLLCTDKRDFEYFFHHRNSLDIGAMLKE 640 
WD40-rpts                                                                                      

Query      641 TYRLMDRTPADIHPSSALNDFEPLTQGQYPVFNKYPTFIVEYQSQERERIRQQEVEYLRERQEVQKLHAEAVRQQAEFEA 720 
WD40-rpts                                                                                      

Query      721 WYKQQELLLQGEEQRRLILQEEESKLAQQRARLAAMKRELKVKELSLIDSSRRRFLKHQQDQRRVHLKRLDDEIQRKMAL 800 
WD40-rpts                                                                                      

Query      801 RDQETAAAVQEVEVRQMELDAQRQLFEQQLAREQERVSQEVRAEVDTRSRRAEADHYTFQNFILADADISQKNQKMLVEE 880 
WD40-rpts                                                                                      

Query      881 SLAEAGQMEVDADWQAEVIKRLEEAKERQEKQRERLVNLGKQTRDKEDKVVQLMQEVEGKQWDDIVAKQAEREDKRWAAT 960 
WD40-rpts                                                                                      

Query      961 SVTTQPRSFISQETEEIEQHSKPHKTLDDSLNPQKEKRRRSPCSSRGLLYKPTDISSNNQSDFSLDRNRGELDSKERELM 1040
WD40-rpts                                                                                      

Query     1041 QEIRELRMKLAARARATDFISASASSIHSH 1070
WD40-rpts                                    

8 WD40-repeats found in QUERY=ENSDARP00000099918 (Len=1070):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    30-68       5.06  323.85  0.00269       22.5%     48.83
  WD 2:  Seg  7    71-110      3.21  247.36  0.02851       15.0%     53.41
  WD 3:  Seg 11   114-151      6.32  375.70  0.00054       27.5%     53.21
  WD 4:  Seg 15   155-194      5.11  325.81  0.00253       27.5%     56.45
  WD 5:  Seg 19   195-240      4.93  318.35  0.00319       15.0%     44.45
  WD 6:  Seg 23   241-290      3.60  263.24  0.01751       20.0%     56.27
  WD 7:  Seg 27   291-332      6.49  382.84  0.00043       27.5%     55.99
  WD 8:  Seg 33   369-419      3.38  254.30  0.02305       15.0%     20.56

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   30-68     IR------N-------SSARQTKTV-RFLQVAFDTT------GE-SFLAGDHHGNIYVF------------D
   WD 2   71-110    -R------N----R--FKLVQKTGQ-ACTALAFNLR------RTTEFLVALADYSIKCF------------D
   WD 3  114-151    -R------Q----L--VSWMRGHEG-AVSSLSIHSS------GS-FAISTSSD-TAQLW------------S
   WD 4  155-194    -F------Q----R--KRKLNVRQSVGIQKVFFLPH------SN-TILSCFSDNSIFAW------------E
   WD 5  195-240    TDTLFCKYQ----L--PVPQNGPRI-HYRTFAVTQN------GK-TLAAAGRSNLVHLW------------C
   WD 6  241-290    LD------SQQLIR--VIQMPSNVK-TVRYLDFLPDSFDDGSNQ-TLGVLSQDGIMRFV------------N
   WD 7  291-332    IQ------S----CKQLFLIGSHED-AISSATVCPK------GH-HIVAVMDSGAIKIY------------D
   WD 8  369-419    -G------A----G--QRAVKTSGR-RIQSKLLPPS------VS-TLDDKENDLPNGLSKKRLQALLREFGE

   WD40 Template    TG------E----C--LRTLSGHTS-GVTSVSFSPD------GK-RLVSGSEDGTIKVW------------D