WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| Pre-calculated Results - Accession: ENSDARP00000099894 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000099894 (Len=2008) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000099894, Len=2008): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKMHRRILGHLSAVYCIAFDRTGSRIFTGSDDALVKIWSSFDGRLHSTLRGHYAEISDLAVNFENTLIAAGSCDKTIRVW 80
WD40-rpts (_______________WD 1______________) (_________________WD 2________________
Query 81 CLRTCAPVAVLQGHSGSITSLQFSPFVKGSKRYMVSTGTDATVCFWQWDVNNNEFSDRQHKFTERPRPGVQTVCSSFSPG 160
WD40-rpts )(____________________WD 3____________________) (__________________WD 4_
Query 161 GMFLATGSTDDVIRIYYLGSGSPEKLAELDSHTDKVDSIQFCHSGERFVSGSRDGTARIWRLHQRHQWKSVLLDMSATLP 240
WD40-rpts ________________)(___________________WD 5___________________) (_______
Query 241 GSAPLTDDENFFKPKVTMVSWDRHDNTVITAVNNHLLKVWNSYTGQLLHVLKGHEAEVFVLEPHPYDPRIMLSAGHDGNV 320
WD40-rpts _______________WD 6_____________________) (_________________WD 7______________
Query 321 FVWDLIKGTKTMHYFNMIEGQGHGAVFDCKFTPDGHRFAMTDSHGHLVIFGFGSSKPYEKLPDQVFFHTDYRPLIRDTNG 400
WD40-rpts ___) (__________________WD 8__________________)
Query 401 FVLDEQTQQAPHLMPPPFLVDVDGNPHPPRFQRLVPGRENIADEHLVPQLGYVATSDGEVVEQVISQQSAESEEVRHSAL 480
WD40-rpts
Query 481 DFAIRQLREHQDRQSGAPGEAGVPAAARVPEPGTPRRVSVNERMEVQSPPNVGLRRSGQVEGVRQMHQNAPRSQMATERD 560
WD40-rpts
Query 561 LQAWRRRVVIPELTPSGYRAQESFRIAKGDEEVNLYNTKKRRVTHSTFRDDSDEEGPCLKRTQSRKRQKNQERKENLAEE 640
WD40-rpts
Query 641 YIEFSCEEGEETASSEASEVEGSDIDSSAEDEEEWKSDSSSRSSSDYSDWTADAGISVRTSDSSRRRTTRRISSSEEEDE 720
WD40-rpts
Query 721 EDDEEEEEPADEEPAVGEEETSSPRKHKKAKSKTPKHSKPRPSINREISNEFRPPAWITDVVPRKSPFVPQMGDEVIYFR 800
WD40-rpts
Query 801 QGHEAYVDAVCRMNLYPINLDKQPWKKMQLRDQEFVKITGIKYEVCPPTLCCLKLTQIDPGTGKITDRTFSIKYHDMADV 880
WD40-rpts
Query 881 IDFLVLRQSYDEARNRVWTSNDRFRSVIDDAWWFGAIVCHEPYQSEYPDSHFQCFKVKWDNGETEKLSPWDVEAIPENAE 960
WD40-rpts
Query 961 QPESASAGVPVTDEEMMDILYKPQRGEWGDRGREQESARIIAGIEQLMTVDITAPFSGPVDLTQYPTYCTVIAYPTDLNT 1040
WD40-rpts
Query 1041 IKLRLKHNFYRRLSALIWDVKHIEQNAKTFNEPRSKIAQSAKIITNVLIKFISKLHCTDIMEIYNAVENMEYSDDEEMDD 1120
WD40-rpts
Query 1121 IDAPGTSAGQRLRQPSVEVVLDRDAWKDHCKRLLDYMFECEDSEPFRDPVDQSDYPDYTNIIDTPMDLGTVRQTLEEDRY 1200
WD40-rpts
Query 1201 ENPIDVCKDIRLIFANAKAYTPNKRSKIYSMTLRLSAFFEENIRKIISDYKTAIKSSLKLRRSQRCRKKSQHQESVSFSQ 1280
WD40-rpts
Query 1281 GSTRQKRATIKTQENTEQSTAKSTSAKVSGPERRRAHEAKETFRRSSSSSSGSDQDSKQSLSQSDEDDEHSSSSRAMRRE 1360
WD40-rpts
Query 1361 TRATRKKAAQNKGAKSRRPESHVKMNGRSRSHERQKPRTSSDSDHEPSQGSDEASENESSPSVSRRPRTRKTAMAAVNKM 1440
WD40-rpts
Query 1441 KLIDTLGDEEGTDDEGGGGSTRPATRASKRSAVIQSSSDSDDEEEAAASQEESNESGSSASEGEKSAGSADSDSSSHSKK 1520
WD40-rpts
Query 1521 NSRTAGRRPCRRPAEKKETSPLTNGHGTKRQWEESDDNSEDGGSPIESENLESDNDLVVRRKSTRRTAKAAVSKIKKINN 1600
WD40-rpts
Query 1601 TDAEEEENCTRDRRQKHRSITQESENSSDEEVETTKTLKHPHQNGRKVDAKELKRCKAPSERQEQSPAAKQKTTHKKSSA 1680
WD40-rpts
Query 1681 TDACMSTTQDSEELSDDVEKSVTHRKRIASEDEENQSDDADQRRVPKNRNRSSNARKQKLCASSDESSSESDEKADRGRI 1760
WD40-rpts
Query 1761 KSEGTSSDEWQKSDTSEEDKKTHPQRKPCPTVASKGVSLRTRPKKNYIMEDSEEEFSPKMDVQAKNGVKNQQANSRTRKP 1840
WD40-rpts
Query 1841 SGGGFKRKHGGSSESDADSKSSRSSDGNKLAEAQRKSAKRFKQLMGSTDSESDFETRCKSENGRAQRSQGKLPTVSRQRR 1920
WD40-rpts
Query 1921 KQSESDKGSNDNGSNFESEESESEASSGSRSSPKRRLRDRDRGTARSRKPRRVVSDDDSDVSFEKPRRGRRIQTRNKGKR 2000
WD40-rpts
Query 2001 TVNYQDSE 2008
WD40-rpts
 8 WD40-repeats found in QUERY=ENSDARP00000099894 (Len=2008): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 5-39 8.13 450.66 5.2e-05 32.5% 46.34 WD 2: Seg 4 43-81 8.62 470.91 2.8e-05 30.0% 52.15 WD 3: Seg 8 82-127 7.69 432.34 9.3e-05 35.0% 52.58 WD 4: Seg 13 137-177 5.72 350.83 0.00116 27.5% 42.05 WD 5: Seg 16 178-221 9.54 508.59 8.7e-06 47.5% 49.31 WD 6: Seg 20 233-281 4.63 305.76 0.00471 25.0% 47.39 WD 7: Seg 23 285-324 7.81 437.13 8.0e-05 35.0% 55.22 WD 8: Seg 27 330-371 4.46 298.99 0.00581 22.5% 50.46Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 5-39 -----------RRILGHLS----------A-VYCIAFDR----TGSRIFTGSDDALVKIWS WD 2 43-81 -G----RL--HSTLRGHYA----------E-ISDLAVNF----ENTLIAAGSCDKTIRVWC WD 3 82-127 LR----TCAPVAVLQGHSG----------S-ITSLQFSPFVKGSKRYMVSTGTDATVCFWQ WD 4 137-177 DR----QH--KFTERPRPG---------VQ-TVCSSFSP----GGMFLATGSTDDVIRIYY WD 5 178-221 LGSGSPEK--LAELDSHTD----------K-VDSIQFCH----SGERFVSGSRDGTARIWR WD 6 233-281 -L----DM--SATLPGSAPLTDDENFFKPK-VTMVSWDR----HDNTVITAVNNHLLKVWN WD 7 285-324 -G----QL--LHVLKGHEA----------E-VFVLEPHP---YDPRIMLSAGHDGNVFVWD WD 8 330-371 KT---MHY--FNMIEGQGH----------GAVFDCKFTP----DGHRFAMTDSHGHLVIFG WD40 Template TG----EC--LRTLSGHTS----------G-VTSVSFSP----DGKRLVSGSEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |