Input parameters:

  Query = ENSDARP00000099855 (Len=1108)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000099855, Len=1108):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSAFCEVDQCPLRTRLTPPELKSFSSLTGFQTAPRDAGQFLSITTKLERALEKVAPLLREIFVDFAPFLSRTLLGSHGQE 80  
WD40-rpts                                                                                      

Query       81 LLIEGTGLVCMKSSTSVVELVMLLCSQEWQNSIQKNAGLAFIELINEGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHK 160 
WD40-rpts                                                                                      

Query      161 HAEFESNCAQYAADRREEEKMCDHLISAAKHRDHVTANQLKQKILNILTNKHGAWGTMSQSQLHDFWRLDYWEDDLRRRR 240 
WD40-rpts                                                                                      

Query      241 RFVRNAFGSTHTDVTLKSLEEYGPEEEEGMKSKKSFRSHSVVSQNPETELMLEGDDDAVSLLQEKEIDNLAGPVVLSTPA 320 
WD40-rpts                                                                                      

Query      321 QLVAPVIVARGTLSITTTEIYFEVDEDDPTFKKIDAKVLGYTEGLHGKWMFSEIRAVFSRRYLLQNTGLEVFMANRTSVM 400 
WD40-rpts                                                                                      

Query      401 FNFPDQATVKKVVYSLPRVGVGTSYGLPQARRISLATPRQLFKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYP 480 
WD40-rpts                                                                                      

Query      481 VFPWVLTNYESEDLDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDGAAPHHYSSLYSTAASTLYWLVRIEPFTTF 560 
WD40-rpts                                                                                      

Query      561 FLNCNENKFDHPDRTFSGIARSWRSCQRDTSDVRELIPEFYYLPEMFVNSSGYDLGVREDRTAVCDVELPVWAKKPEDFV 640 
WD40-rpts                                                                                      

Query      641 RINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLSYEGSINLDTITDPQLRESMEAQIQSFGQAPSQLLIE 720 
WD40-rpts                                                                                      

Query      721 PHPPRSSAMHLCFLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLSIPAAVTVTCSRLFAVNRWHNTVGLRGA 800 
WD40-rpts                                                                                      

Query      801 PGYSLEQAHHLPIEMDSLIANNSGISKRQITDLVDQSIQINTHCFVVTADNRYILACGFWDKSFRVYSTETGKLTQIVFG 880 
WD40-rpts                                                                             (________

Query      881 HWDVVTCLARSESYIGGDCYIVSGSRDATLLLWYWSGRHHIIGDNPNNSDYPAPRAVLTGHDHEVVCVSVCAELGLVISG 960 
WD40-rpts      ___________WD 1__________________)        (_____________________WD 2____________

Query      961 AKEGPCLVHTITGDLLRALEGPENCLRPRLISVSSEGHCIIYYERGQFCNFSINGKLLAQMEINDSTRAILLSSDGQNLV 1040
WD40-rpts      _________)                                           (_________________WD 3_____

Query     1041 TGGDNGVVEVWQACDFKQLYIYPGCDAGIRAMDLSHDQRTLITGMASGSIVAFNIDFNRWHYEHQNRY 1108
WD40-rpts      ___________)   (_________________WD 4________________)              

4 WD40-repeats found in QUERY=ENSDARP00000099855 (Len=1108):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 16   872-914      5.05  323.08  0.00275       32.5%     49.76
  WD 2:  Seg 21   923-970      4.43  297.74  0.00603       25.0%     53.84
  WD 3:  Seg 29  1014-1052     5.08  324.66  0.00262       30.0%     56.96
  WD 4:  Seg 33  1056-1094     4.50  300.65  0.00552       22.5%     58.13

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  872-914    -GK--------LTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLLWY
   WD 2  923-970    GDNPNNSDYPAPRAVLTGHDHEVVCV----SVCAELGLVISGAKEGPCLVHT
   WD 3 1014-1052   NGK--------LLAQMEINDS-TRAI----LLSSDGQNLVTGGDNGVVEVWQ
   WD 4 1056-1094   -FK--------QLYIYPGCDAGIRAM----DLSHDQRTLITGMASGSIVAFN

   WD40 Template    TGE--------CLRTLSGHTSGVTSV----SFSPDGKRLVSGSEDGTIKVWD