WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000099567 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000099567 (Len=674) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000099567, Len=674): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTCCETMTLRNITGDLLHRQIRENRALDFQRHYHVTDPFIKRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHAIIW 80
WD40-rpts (_________________WD 1________________
Query 81 DPFRHSKLITMHTGHAANIFSVKFLPHSDDRILITGAADTKVHVHDVTAKETIHMFSDHTNRVKRIATAPMWPNTFWSAA 160
WD40-rpts ) (__________________WD 2_________________) (_________________WD 3_________
Query 161 EDGLIRQYDLRESSKRSDVLIDLTEYCGQLVEAKCLAVNPRDNNYLAVGANGPFVRLYDIRMIHNHRKSLSQSSSAGVHT 240
WD40-rpts ________) (________________WD 4________________) (_________________
Query 241 FCDKRKSIPDGAGQYYVAGHLPVKLPDYNNRLRVLVATYVTFSPDGTELLVNMGGEQVYLFDLTFKQRPYTFLLPKKCHS 320
WD40-rpts WD 5________________)(__________________WD 6_________________) (______________
Query 321 STDVQNGKTTNGVSNGIHLPASRLKLAKVSSSGSGDLPLHLERIKQRANDAFARQQWTQAIQLYSLGIHEAGPNAMLYGN 400
WD40-rpts ____________WD 7__________________________) (_________________WD 8______
Query 401 RAAAYMKRKWDGDHYDALRDCLKALSLNPGHLKAHFRLARCLFELKYVAEALECLNDFKGKFPEQAHSSACDALDKDIKA 480
WD40-rpts __________) (____________WD 9____________)
Query 481 ALFSKTDASDDKKGNSSIRFHNFSRKESIPEDEIVLRERSFDYKHRYCGHCNTTTDIKEANFFGSKGQYIVSGSDDGSFF 560
WD40-rpts (___________________WD10________________
Query 561 IWEKETTNLVRILQGDESIVNCLQPHPGHCFLATSGIDPVVRLWSPRPECENENGRVVEDMEGAAQANQRRMNADPLEVM 640
WD40-rpts __) (_________________WD11________________)
Query 641 LLNMGYRISGLSSRGAEGSDEEDSSEGQVQCRSS 674
WD40-rpts
 11 WD40-repeats found in QUERY=ENSDARP00000099567 (Len=674): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 43-81 9.19 494.30 1.4e-05 30.0% 51.24 WD 2: Seg 6 86-126 7.52 425.09 0.00012 30.0% 54.30 WD 3: Seg 10 130-169 7.69 432.25 9.3e-05 30.0% 53.46 WD 4: Seg 15 182-219 6.57 386.24 0.00039 17.5% 46.60 WD 5: Seg 18 223-261 6.35 376.79 0.00052 12.5% 18.48 WD 6: Seg 21 262-302 7.31 416.65 0.00015 22.5% 37.51 WD 7: Seg 25 306-363 3.73 268.84 0.01474 17.5% 36.46 WD 8: Seg 29 373-411 4.98 320.40 0.00299 10.0% 19.43 WD 9: Seg 32 418-447 3.94 277.57 0.01126 5.0% 37.36 WD10: Seg 41 521-563 7.93 442.33 6.8e-05 30.0% 50.42 WD11: Seg 45 567-605 8.44 463.46 3.5e-05 22.5% 50.25Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 43-81 -LGLE-AELQGHSGCVNCLE----WNE--K-------------------GDLLASGSDDQHAIIWD WD 2 86-126 -SKLI-TMHTGHAANIFSVK----FLPHSD-------------------DRILITGAADTKVHVHD WD 3 130-169 -KETI-HMFSDHTNRVKRIA----TAP--M------------------WPNTFWSAAEDGLIRQYD WD 4 182-219 ---DL-TEYCGQLVEAKCLA----VNP-RD-------------------NNYLAVGANGPFVRLYD WD 5 223-261 -IHNH-RKSLSQSSSAGVHT----FCD--K-------------------RKSIPDGAGQYYVAGHL WD 6 262-302 PVKLPDYNNRLRVLVATYVT----FSP--D-------------------GTELLVNMGGEQVYLFD WD 7 306-363 -KQRP-YTFLLPKKCHSSTD----VQN--GKTTNGVSNGIHLPASRLKLAKVSSSGSGDLPLHLER WD 8 373-411 -ARQQ-WTQAIQLYSLGIHE----AGP--N-------------------AMLYGNRAAAYMKRKWD WD 9 418-447 -----------LRDCLKALS----LNP--G-------------------HLKAHFRLARCLFELKY WD10 521-563 -FDYK-HRYCGHCNTTTDIKEANFFGS--K-------------------GQYIVSGSDDGSFFIWE WD11 567-605 -TNLV-RILQGDESIVNCLQ----PHP--G-------------------HCFLATSGIDPVVRLWS WD40 Template TGECL-RTLSGHTSGVTSVS----FSP--D-------------------GKRLVSGSEDGTIKVWD |
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