WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| Pre-calculated Results - Accession: ENSDARP00000099546 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000099546 (Len=1312) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000099546, Len=1312): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 LLDVTADGLLDTQARELLTDLKQRICNTGRLQPLCMELSKGAMDPSRKEHKEYLGKLCEQVTSQLKELISRNALQTSGTS 80
WD40-rpts
Query 81 VDPVWSWLKQEIFHHAKLSEEKCAVFKGRDDILGKISITLWESNDVSHGPLLVHGPPGVGKTALLCKLAKEMRAVVDNRG 160
WD40-rpts
Query 161 VVLLRLLGTSLLSSDVDSVLRGVCLQVCGALGLQSPYSHIAYTHEGLVRFFHSMLEDVSKQGDTLLLILDSLEQLLETNK 240
WD40-rpts
Query 241 LHKLDWIPKIIPPNVQIVFSTSNECLDKCKSLVSAEENIFKLELLTKDQGRDVIDAYMSAAERKLTAEQQDAILRYFEQS 320
WD40-rpts
Query 321 GNPLHLKLMLDTAKLWSSYTPMSSVHLDKSAEEVMTQFVESLEVNHGKKLVSHALSFILLSRYGLSEAELQDVLSLDNDV 400
WD40-rpts
Query 401 LAEIYKCWLPPSHTLMRFPRFHWSRLRHDLSAHLTERWEAGVLLLGFTHRQFAELVRRRYLSRDVKADMHTILAEYFSGQ 480
WD40-rpts
Query 481 WSKGQLRPILLPSLSAFLNADRKVSPQPLWFSEELANLRKIHELPYHLAHAGKWDELRQSVLGSLDWLCCKTLQCGVSCV 560
WD40-rpts
Query 561 IQDLTLCTDLTDCPEIQLLKETFLLLKPSLDFSDGRVDPSLLVTEIFARLQGLADHYPSMIGQLCSQCMDWFESYSDPLL 640
WD40-rpts
Query 641 VPKCSFFEAPGGPLKSTLRGFTKGVKAVVLCSKRKLLLAGSEDGLIIVWSLNNLQPLHTLSGHKAGVLSLKLTDKTNNCL 720
WD40-rpts (_________________WD 1________________) (_________________WD 2_____
Query 721 STGLDGTLRKWCLISGLQLFCITDAVSVQTHSPTHIHMNEERKIIITNPSSQVKAWDLDTAEPLFELTAVIGSVLGIVED 800
WD40-rpts ___________)(____________________WD 3___________________) (________________WD
Query 801 EIACICRHHNITCCLTLTKHSKILIAFGESRLHSVCTLPFFRKVQAKCIISVLFKGFVFVCVQVWSHEMESVIDLPSPAL 880
WD40-rpts 4_______________)(____________________WD 5___________________) (______________
Query 881 FLRTSEDEKLLLAEGCDRTLCVFLVTLTSMHKVLDLQHDASILCAVSNSEGSEIITSAQDRIIRVWSVTTGALLDWIGVM 960
WD40-rpts ___WD 6________________) (_________________WD 7_________________) (_________
Query 961 DSSVSSLAVHQRFIISASVIVNQLKVWQLDHNTTHRNKSFIPAYCPLAVLSKDGDTVFYVKEGNKTEVFTWSCSEGETCL 1040
WD40-rpts _______WD 8________________) (__________________WD 9_________________) (____
Query 1041 QLDSMDVSSEVCCMELAQQKRLLFCGLHTGTIFIYPLDFIPETLCLPPPESLPMVRSMAISPREDKMAVAYEDAVCLFEI 1120
WD40-rpts ______________WD10_________________)(___________________WD11__________________)
Query 1121 TARDSFPCVDGPFERYSLDLLHSSISAMALLSDCRLLYGTFGGEVVIYDFKSATAAELDHHGAAITCITMSNWDAQALIG 1200
WD40-rpts (________________WD12________________) (_________________WD13_______
Query 1201 SQDCVQKLWNLSPVLLNHTMEYKGFYFEGVLCAVFSINDKYVFTGSLDKTVKVWDVSSGCLLYIQYVYSPVIRMMPHKDG 1280
WD40-rpts _________) (_________________WD14________________)
Query 1281 FVAVSQHGSFIKEGFRCPDSLKPGYNPLRNFQ 1312
WD40-rpts
 14 WD40-repeats found in QUERY=ENSDARP00000099546 (Len=1312): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 11 652-690 8.29 456.99 4.3e-05 45.0% 56.39 WD 2: Seg 15 694-732 8.83 479.54 2.1e-05 35.0% 58.89 WD 3: Seg 19 733-777 5.05 323.38 0.00273 17.5% 46.74 WD 4: Seg 23 781-817 5.13 326.67 0.00246 15.0% 46.23 WD 5: Seg 27 818-862 5.69 349.79 0.00120 22.5% 48.21 WD 6: Seg 31 866-904 7.59 428.35 0.00010 20.0% 48.70 WD 7: Seg 34 908-947 7.15 409.83 0.00019 17.5% 57.12 WD 8: Seg 38 951-988 6.08 365.89 0.00073 20.0% 49.37 WD 9: Seg 42 992-1032 5.95 360.30 0.00087 17.5% 50.87 WD10: Seg 46 1036-1076 6.81 395.99 0.00029 25.0% 57.31 WD11: Seg 50 1077-1119 4.30 292.30 0.00714 20.0% 49.16 WD12: Seg 54 1132-1169 4.77 311.69 0.00392 20.0% 42.98 WD13: Seg 57 1172-1210 8.13 450.58 5.3e-05 22.5% 55.43 WD14: Seg 61 1217-1255 7.71 433.03 9.1e-05 32.5% 52.25Multiple sequence alignment of 14 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 652-690 -GP------LKSTLR----GF--TKGVKAVVLCS-----KRKLL--LAGSEDGLIIVWS WD 2 694-732 -LQ------PLHTLS----GH--KAGVLSLKLTD-----KTNNC--LSTGLDGTLRKWC WD 3 733-777 LISGLQLFCITDAVS----VQ--THSPTHIHMNE-----ERK-I--IITNPSSQVKAWD WD 4 781-817 -AE------PLFELT----AV--IGSVLGI--VE-----DEIAC--ICRHHNITCCLTL WD 5 818-862 TKH------SKILIA----FG--ESRLHSVCTLPFFRKVQAKCI--ISVLFKGFVFVCV WD 6 866-904 -SH------EMESVI----DL--PSPALFLRTSE-----DEKLL--LAEGCDRTLCVFL WD 7 908-947 -TS------MHKVLD---LQH--DASILCAVSNS-----EGSEI--ITSAQDRIIRVWS WD 8 951-988 -GA------LLDWIG----VM--DSSVSSLAVHQ-----RFI-I--SASVIVNQLKVWQ WD 9 992-1032 -NT------THRNKS----FI--PAYCPLAVLSK-----DGDTVFYVKEGNKTEVFTWS WD10 1036-1076 -GE------TCLQLD----SMDVSSEVCCMELAQ-----QKRLL--FCGLHTGTIFIYP WD11 1077-1119 LDF------IPETLCLPPPES--LPMVRSMAISP-----REDKM--AVAYED-AVCLFE WD12 1132-1169 -PF------ERYSLD----LL--HSSISAMALLS-----DC-RL--LYGTFGGEVVIYD WD13 1172-1210 -SA------TAAELD----HH--GAAITCITMSN-----WDAQA--LIGSQDCVQKLWN WD14 1217-1255 -NH------TMEYKG----FY--FEGVLCAVFSI-----NDKYV--FTGSLDKTVKVWD WD40 Template TGE------CLRTLS----GH--TSGVTSVSFSP-----DGKRL--VSGSEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |