Input parameters:

  Query = ENSDARP00000098826 (Len=596)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000098826, Len=596):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKMAAEGGGKEMNEIKSQFSTREGAYKLLSHSEYSRPNRVPFNSQGSNPVRVSFVNVNDQSGNGERICFNVGRELYFYI 80  
WD40-rpts                                    (___________________________WD 1__________________

Query       81 YKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVCLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVRW 160 
WD40-rpts      ________)   (__________________WD 2__________________)                          

Query      161 VPGSESLFLVAHSSGSMYLYNVEHTCGTTAPHYQLLKQGESYAVHTCKSKSTRNPLLKWTVGDGALNEFAFSPDGKFLAV 240 
WD40-rpts                    (_______________WD 3______________)   (_________________WD 4______

Query      241 VSQDGFLRVFNFDAVELHGTMKSYFGGLLCVCWSPDGKYIVAGGEDDLVTVWSFADCRVIARGHGHKSWVSVVAFDHYTT 320 
WD40-rpts      __________)   (_________________WD 5________________)   (____________________WD 

Query      321 SVEESEPMEFSGSDEDFQEQLQCGRERANSTQSRLSKRNSTDSRPLSVTYRFGSVGQDTQLCLWDLTEDILFPHLPLSRT 400 
WD40-rpts      6___________________)   (__________________WD 7_________________)        (______

Query      401 RTHTNVMNASAAPAASSSTLIANTANSANGSGSSTNTPGNALPAPLPRSNSLPHSAAGAANSRSSENPAAAGVSKFATLS 480 
WD40-rpts      ___________WD 8________________)   (_________________WD 9________________)      

Query      481 LHERKERHPDKDHKRNHSMGHISSKSSDKLNLLTKTKTDPAKTLGTPLCPRMEDVPLLEPLVCKKIAHERLTVLIFLEDC 560 
WD40-rpts            (_________________WD10________________)            (________________WD11__

Query      561 IVTACQEGFICTWARPGKVGLLSSQTQANSPSGTVV 596 
WD40-rpts      _____________)                      

11 WD40-repeats found in QUERY=ENSDARP00000098826 (Len=596):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    31-89       3.78  270.88  0.01384       15.0%     50.89
  WD 2:  Seg  7    93-134      6.26  373.14  0.00058       15.0%     55.43
  WD 3:  Seg 14   175-209      5.15  327.43  0.00241       10.0%     33.93
  WD 4:  Seg 18   213-251      9.00  486.35  1.7e-05       30.0%     53.92
  WD 5:  Seg 22   255-293      9.88  522.78  5.6e-06       37.5%     55.95
  WD 6:  Seg 26   297-341      6.36  377.37  0.00051       17.5%     52.45
  WD 7:  Seg 30   345-385      6.97  402.72  0.00023       22.5%     51.68
  WD 8:  Seg 34   394-432      6.49  382.72  0.00043        7.5%     32.03
  WD 9:  Seg 37   436-474      6.62  388.08  0.00037       15.0%      8.01
  WD10:  Seg 38   487-525      3.61  263.61  0.01732       15.0%     19.59
  WD11:  Seg 40   538-574      5.13  326.45  0.00248       22.5%     45.03

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   31-89     SHSEYSRPNRVPFNSQGSNPVRVSFVNVNDQSG---NGERICFNV-G------R--ELYFYIYKGVRKAAD
   WD 2   93-134    -PI--------------------DKRIYKGTQPTCHDFNHLTATAES------V--CLLVGFSAGQVQLID
   WD 3  175-209    -------------------------GSMYLYNV---EHTCGTTAPHY------Q--LLKQGESYAVHTCKS
   WD 4  213-251    -RN--------------------PLLKWTVGDG---ALNEFAFSPDG------K--FLAVVSQDGFLRVFN
   WD 5  255-293    -VE--------------------LHGTMKSYFG---GLLCVCWSPDG------K--YIVAGGEDDLVTVWS
   WD 6  297-341    -CR--------------------VIARGHGHKS---WVSVVAFDHYTTSVEESE--PMEFSGSDEDFQEQL
   WD 7  345-385    -RE--------------------RANSTQSRLS---KRNSTDSRPLS------VTYRFGSVGQDTQLCLWD
   WD 8  394-432    -HL--------------------PLSRTRTHTN---VMNASAAPAAS------S--STLIANTANSANGSG
   WD 9  436-474    -NT--------------------PGNALPAPLP---RSNSLPHSAAG------A--ANSRSSENPAAAGVS
   WD10  487-525    -RH--------------------PDKDHKRNHS---MGHISSKSSDK------L--NLLTKTKTDPAKTLG
   WD11  538-574    -LE--------------------PLVCKKIAHE---RLTVLIFLEDC----------IVTACQEGFICTWA

   WD40 Template    TGE--------------------CLRTLSGHTS---GVTSVSFSPDG------K--RLVSGSEDGTIKVWD