WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000098798 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000098798 (Len=4852) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000098798, Len=4852): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAAMIPPVKLKWLEHLNSSWISEDSESISTREGVALLYGKLLTNKEVVVLPQQVLCLKGPQLPDFERECLSSDEQEHYLD 80
WD40-rpts
Query 81 ALLASQLALAKTVCSDSPFATALRKRLLVLQRVFYALSNKYHDKGKVKQQQHSTENTMGSADLQAVSERPRSSTDALIEM 160
WD40-rpts
Query 161 GVRTGLSLLFALLRQSWTLPPAGPGINLCNDVITTAIEVVGSLPPLSLANESKIPPMGLDCLAQVTSFLKGVTMRNSGAD 240
WD40-rpts
Query 241 VVGRRLACELLLGLAAQRGSLRYLLEWVEMALAASAGVSSLEQSQEGLMGYDCFMNILMQMRRSLGSSADRSQWREPTRT 320
WD40-rpts
Query 321 ADGLCSLYEAALCLFEEVCRMASDYSRTCASPDSIQAGEAAMVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAPSFSDA 400
WD40-rpts
Query 401 QTIEAGQYCTFVISSDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRAIKKVSSSKGSDGHTLAFTSEGEVFSWGDG 480
WD40-rpts
Query 481 DYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVSEDGELYTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGE 560
WD40-rpts
Query 561 VSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRVYKPKVVEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG 640
WD40-rpts
Query 641 CGSSEATALRPKLIEELATTRVVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVIGLDGVAIQQISA 720
WD40-rpts
Query 721 GTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERYCDGINNEIPPLPFPSSKEHHNFLKLCLRLLSNHLALA 800
WD40-rpts
Query 801 LAGGVATSILGRQARPLRNLLFRLMDASVPDEIQEAVIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQ 880
WD40-rpts
Query 881 LDIILTSLQDHTHVASLLGYSCPPDASEPPAQPSDSTHVPGTHSDTHPDTHLAEILMKTLLRNLGFYTDQAFGELEKNSD 960
WD40-rpts
Query 961 KILQGTSSSDSSQPAHLHELLCSLQKQLLAYCHINSVTEGSSSVALLHKHLQLLLPHATDIFNRSATLLRESSGNGSVRE 1040
WD40-rpts
Query 1041 KLRDVIYMSAAGSMLCQIVTSLLLLPVWVARPLLSFLLDLLPPLDRLNKLLPAATPLEEQELQWPLHGSPDLVDPVCVSG 1120
WD40-rpts
Query 1121 PAQSWVWLVDLERTAALLVGRCLGGMLQGAAPSAEEQHTTHWLKTPLFSNGLETEIPQLDACISSLLEVALCGNEEQRPF 1200
WD40-rpts
Query 1201 DCQLRADMSVLVDLALGSTKEPTHSLWSNMQDYAISKDWDSASLPNEALLDTVSRFVLAVLLKHTGLLGQACGEGRYQPC 1280
WD40-rpts
Query 1281 KLLAEVYRSVYKVRNRLLACKNMELIQTRSSSRERRISDNVDSVEMDPQEHSFTRTIDEEAELEERDREREREEGHQEQE 1360
WD40-rpts
Query 1361 DEEEEREHEVMTAGKIFQCFLSAREAARGRDRDRTGSMSVQEEPPQPGPERRNSSTPQEGQDLYTTSCNAVIHRCAMLLL 1440
WD40-rpts
Query 1441 ALSTPLAQHINQQPLTGGVNQDGVGFMTRSESLSAESRSIHSSPSCRLTKSRSESDLSQPESDEEGYSLNARRNVDLDLA 1520
WD40-rpts
Query 1521 FTPKKRGFLYSSPDSSADWFGGRLARECFYSSQQSYDESDLDLNQSLRLHALIENIVNFISGDVGNAPAFKEPEESVSTS 1600
WD40-rpts
Query 1601 PQAIIIAMEQQQSRAELRLEALHQIVVLISGMEEKSSQAGSGAGRTGLSFHSASLLTSVRLQFLSGCFGLGAVSYGGPKG 1680
WD40-rpts
Query 1681 ENVQLHHYQDGVRAAKKSLQMEIQTAVHKIYQQLSVTLERALQANKHHIEAQQRLLLVTVFALSVRYQPVDVSLAISSGL 1760
WD40-rpts
Query 1761 LDVLSQLCGTETLLGQTLQLLQKPAGSQLSTALKVASTRLLQILAISTGTYADRLSPKVVQALLDLLCSQLKTLLAQAAG 1840
WD40-rpts
Query 1841 NSLIASTDLQEKTDDCADAQKKDFRALLRKRHTAELHLGDFLVFLRRVVSSKAIQSKMASPKWTEVLLNIAAQKCCSGIP 1920
WD40-rpts
Query 1921 LVGNLRTRLLALHVLEAVLPACESSVEDHQMTQVVERLFSLLSDCMWEAPVAQAKHTIQLKEREQELKLQGETDEEEENL 2000
WD40-rpts
Query 2001 PIQEVTFDPEKAQCCVVESGQGLTHGSGGKGYGLASTGISSGCYQWKFYIVKENRGNEGTCVGVSRWPVHDFNHRTTADM 2080
WD40-rpts
Query 2081 WLYRAYSGNLYHNGEQTLTLSSYTQGDYITCVLDMEARTVSFGKNGEEPKLAFEDVDATELYPCVMFYSSNPGEKVKICD 2160
WD40-rpts
Query 2161 MQMRGTPRDLLPGDPICSPVATVLAEATTQLIRILHRSERWTQTINHSILQRLQQIRSCLRDGAPPAGSTRLRKSRSAQS 2240
WD40-rpts
Query 2241 REEQDEKEEEREEERGRSGRHAAAELPEAHLRTLCHQVWPVLAVIGGVDGGLRMGGRCVHKQTGRHATLLGVVKEGSTSA 2320
WD40-rpts
Query 2321 KVQWDEAEITISDTPLYNLEPIEPLPFDVSRFRGLTAALLLDLTALASLQDDGTKSASSRRHERRHRHEQQEEREIEPRG 2400
WD40-rpts
Query 2401 KPKEGTGDLRVSHSLDEVRARAPPNSRSESELAAYTQDATQQTPAEGRRRLQEMVGSRGSSQEAVAQAEVHAVQLSYLYL 2480
WD40-rpts
Query 2481 GAMKTLSVLLSCSKYAELLLIPKVTPDSGHNADCASPGVSVCQEEAELRSALQFLMRHMVKRAVMRSPIKRALGLADLER 2560
WD40-rpts
Query 2561 AQAMIYKLVVNSLLEEQEGQSSKPVDTECEELEGEQQFQTPVTTSPSASSSTSFMSSSLEDTTTATTPVTDAETAPASES 2640
WD40-rpts
Query 2641 PGVMPLSLLRQMFSSYPTTTLLPARRAQTPPVSSLPTSPSDEHGRRQSLTSPESQPARTTSRTALSDPSSRLSTSPPPPA 2720
WD40-rpts
Query 2721 IAVPLLEMGFSLRQIMKALEATGARGEADAQNITVLAMWMIDHPGTADSEEASDPCSGAAGGGKSTERSFLRSPGDIPNA 2800
WD40-rpts
Query 2801 DATEMEEGFSESPEGLDQDSASAGPTPRGRSAASRKHRFDLAARTLLARAAGLYRSVQAHRTQARREGSGLQQESGPLGA 2880
WD40-rpts
Query 2881 LYDFNLDEELELELDQEAMEAMFTQELASDSDILGMWIPEHVCESEDRDEVVVCELCGVSVSSFNQHMKKSHPGCGRSAN 2960
WD40-rpts
Query 2961 RQGYRSNGSYVDGWFGGECGSGNPYYLLCGSCREKYLNMKSKIKGPMPERYKGQAPDLLGKQDSVYEEDWDMLDVDDAER 3040
WD40-rpts
Query 3041 LTGEEEFELLSAPLGLSERRPVPEAVHFSDTDPLGASVAMITATNSMEETLLQIGCQSSVDKSSSGRLSLGEQAAGLQTS 3120
WD40-rpts
Query 3121 ADRLVALKRVTAAAQVLLARTMVMRALSLLSVSGSSCSLAAGLESLGLTDIRTLVRLMCLAAAGRAGLSTGLALGPGSSE 3200
WD40-rpts
Query 3201 RPRGANKPTKPISCLAYLSTAVGCLASNSPSAAKLLVQLCTQNLISAATGMNLTTVDDPIQRKFLPSFLRGVAEENKLVT 3280
WD40-rpts
Query 3281 SPNFVVTQALVALLADKGARLRHGYEKAELEKRAVAGLISPLYAHLSCALAVGPLELANALAACCLSSRLSSQHRQWAAQ 3360
WD40-rpts
Query 3361 QLVRTLAAHDRDNQNHPQTFADVAGDLRKWSTFRLEAHQSRVITCGWCSKKGLLATSGNDGTVRVWNVTKSQYTLQQTCV 3440
WD40-rpts (___________________WD 1__________________)
Query 3441 FNKTDDSSEDCMSNLGSPGDPSLAPVAWSVSGKYLAAAMEKIVNIWQVNGGKVSLELQPHWVSSLAWPEEEAGSLWGGEP 3520
WD40-rpts
Query 3521 RELLLVGRMDGTLGLLEVLDDSDMQRTELQHCFRKDVAVMQIAWYSEDRPFAVGYADGKLLIGFKEPLENGSVVVIDAHK 3600
WD40-rpts (_________________________WD 2________________________)(_______________
Query 3601 ESISSLRWAPGGQVLLSCAKEEIVRLWTGSGTDLGQNWTCLQSIMHPAVVNAVAWCSLPGQGPKPLNMFATCCQNGLVSV 3680
WD40-rpts ____WD 3___________________)
Query 3681 WTVPQDPSSYSQSSTAYLDAWWESESRSRLMLKPQWCEGAVCVFQLRGHMTPVRTVAFSPDGLALVSGGVGGLLNIWSLR 3760
WD40-rpts (_________________WD 4________________)
Query 3761 DGSVLQTVVAGSGAIHNTVWIPDVGVAVCSNRSKDVLVVNSSMEFMATNHVLATCRTALKKQGVVGLNMAPCMRAFLERL 3840
WD40-rpts
Query 3841 PIMLQEQYAYEKPHVVCGEQLVHSPYMQCLASLSVGLQLDVLLCHPPVPPHMAHCPPEPGSSSIPSHGSWASSEWAWLHC 3920
WD40-rpts
Query 3921 FSTTIKTAEALARGHTFPESFIVPDLEPVAKDKLALLMDNSKWVSGMDEQVMSWATSRPEDWHLGGKCDVFLWGAGRHGQ 4000
WD40-rpts
Query 4001 LAEAGRNILVPTLAPSFSQAQQVVCGQNCTFVIQANGTVSACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQMVTSCG 4080
WD40-rpts
Query 4081 SDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFSFGNGDYGRLGLG 4160
WD40-rpts
Query 4161 NTSNKKLPERVSALEGHQVGQVACGLNHTLAVSADGMTVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIKKVACGTQ 4240
WD40-rpts
Query 4241 FSVALTKDGNVYTFGQDRLIGLPEGRARNHNRPQQVPALTGVFIEDVAVGAEHTLTLSSTGDVYAWGSNSEGQLGLGHTN 4320
WD40-rpts
Query 4321 HVREPTLISALQGKNIQQISAGRCHSAAWTAPPVPPRAPGSSVPLQLGLPVCVPPQYSALREVSMEALRARLRLLYHFSD 4400
WD40-rpts
Query 4401 LMYSSWRLLNLSPNNQSCTSRYNAGTWGIVQGQLRPLLAPRVYTLPMVRSIGKTMVQGKNYGPQITVKRISTRGRKCKPI 4480
WD40-rpts
Query 4481 FVQIARQVVKLNASDLRLPSRAWKVKLVGEGADDAGGVFDDTITEMCQELETGVVDLLIPSPNAAAEVGYNRDRFLLNPS 4560
WD40-rpts
Query 4561 ACLEEHLLQFKFLGILMGVAIRTKKPLDLHLAPMVWKQLCCIPLSLEDLEEVDLLYVQTLNSILHLEDSGITEQNFHEMI 4640
WD40-rpts
Query 4641 PLDSFVGQSADGKMVPIIPGGNSIPLTFSNRKEYVERAIEYRLHEMDRQVAAVREGMSWIVPVPLLSLLTARQLEQMVCG 4720
WD40-rpts
Query 4721 LPEISVEVLKKVVRYREVDEQQQLVQWFWQTLDDFSNEERVLFMRFVSGRSRLPANTADISQRFQIMKVDRPYDSLPTSQ 4800
WD40-rpts
Query 4801 TCFFQLRLPPYSSQSVMAERLRYAINNCRSIDMDNYMLSRNVDNAEGSDTDY 4852
WD40-rpts
 4 WD40-repeats found in QUERY=ENSDARP00000098798 (Len=4852): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 62 3385-3427 6.59 386.68 0.00038 22.5% 28.20 WD 2: Seg 70 3530-3584 4.03 280.98 0.01013 15.0% 36.63 WD 3: Seg 74 3585-3628 4.57 303.38 0.00507 17.5% 37.57 WD 4: Seg 80 3720-3758 7.66 431.20 9.6e-05 42.5% 44.14Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3385-3427 GDLR----KWSTFRLEAHQSR---------------VITCGWCSKKGLLATSGNDGTVRVWN WD 2 3530-3584 DGTL----GLLE---VLDDSDMQRTELQHCFRKDVAVMQIAWYSEDRPFAVGYADGKLLIGF WD 3 3585-3628 KEPLENGSVVVI---DAHKES---------------ISSLRWAPGGQVLLSCAKEEIVRLWT WD 4 3720-3758 -AVC----VFQL---RGHMTP---------------VRTVAFSPDGLALVSGGVGGLLNIWS WD40 Template TGEC----LRTL---SGHTSG---------------VTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |