WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000098322 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000098322 (Len=4832) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000098322, Len=4832): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPSPSFSLNAQLRFHDKWLKIDLQRAFSHEGLSEMWNEMVKDEEIVFDREESAHPEDCADCTQKKDDTNDKEKKEEEEAA 80
WD40-rpts
Query 81 ATAASSFHHSIIEMWDWGRQPETSELRDCLMALVDDQQKLSSQTAKSTLSALRLSQRLVILERYLISLTHSMMEEKYKVR 160
WD40-rpts
Query 161 WKSPPSPPLSAVDNKSARPVSKGVEGLARVGSRAALSFAFAFLRRAWRSGDDADLCSELLQESLDALRALPEATLFDEGT 240
WD40-rpts
Query 241 VSPVWLEVVERATKFLSDIHGSASGKAPSNIPLQDQHLALAILLELAVQRGTLSQLLSAVLLLLRLWDSGTREMDNERST 320
WD40-rpts
Query 321 QGTSAPLLPLLQRFQNIHSSKEEPVPEEEIEILSAPLSPNESFLRYLTLPQDNDLAIDLRQTAVVIMAHLDRLAAPCSPP 400
WD40-rpts
Query 401 QCSSPTSNKGTLQEVIGWGLLGWKPYANVNGPIQCKALSNLGVTQIVCSEKGFLILTITGAVYTQNYKSTTLAPMLVHAL 480
WD40-rpts
Query 481 TSRKIMKLAAHPDGQHYLALSVNGEVFSWGCGDGGRLGHGDTTYLEEPTMISVFSGRPVGKQVVHIACGSTYSAAITADG 560
WD40-rpts
Query 561 ELHTWGRGNYGRLGHGSSEDQTTPMLVTALKGLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKL 640
WD40-rpts
Query 641 VEKLQDLDIVKVCCGSQFSVALTKDGQVYTWGKGDNQRLGHGTDEHVRYPKLLDSLQGKRVVDIAVGSTHCLALTEEGEV 720
WD40-rpts
Query 721 HSWGSNDKLQHFDTLFSNKKQPKALPGLNSKHIVGISCGPGQSFSWSSCSEWSVGLRVPFVVDVCTMTFDQLDLLLRQVS 800
WD40-rpts
Query 801 EGMDGSSDWPPPQEKECMVVAALNLLRLQLHAAISNQVDPEELGLGLGSVLLNNLKQTVVTLASNGGVLNTVQAAAQTVL 880
WD40-rpts
Query 881 QSGWSVLLPTAEERARALSSLLPNAASANEMSVSPGRRFMIDLLVSSLMADGGLESALNAAITAEIQDIEAKKEAQKEKE 960
WD40-rpts
Query 961 IDEQEASASSLHRCRTTLDKDLINTGIYESANKQSLPLVQLVQQLLRNIASQTIARLKDVARRISNCQDTEQVSKERSAS 1040
WD40-rpts
Query 1041 LDLLLRFQRLLVCKLYVGVNGTVGVGGYTLSHSEILGVGSLLKKYMALLCTHIGDILPVATSIALNSHRHFAEVARVLEG 1120
WD40-rpts
Query 1121 DLTGVLLPELIVSIVLLLTHDAGLMQETGSIPLLAALLEHLDRFNYLAPGTERDDNEDLAWPGLMGFFFNGPSSKNNEEV 1200
WD40-rpts
Query 1201 SLIRKADLENHNKDGGFWTVIEGKVYDIKDFQAQTLTGNSILAQFAGEDPVVALEAALQFEDTRESMQAFCVGQYMEPNQ 1280
WD40-rpts
Query 1281 EMVTTPDLSSLSSPLIDAERNLGLLLGLHASYLAMSTPLSRIELECAKWLQSSIFFGGLQTSQIHYNYNEEKDEDHCSSP 1360
WD40-rpts
Query 1361 GTTTPDKAKLYCRRITLSDHAQPFLQAIADNTTQDHTVKDFLCQIERCCKQYHLITPITFPPEHPVEEVGRLLLCCLLKH 1440
WD40-rpts
Query 1441 QDLGHVALSLVDQCALGMDQGKQRSLPKSVIDVCRMVYQAKCSLIKTHQEQGRSYKEVCAPVIERLRFLFNELRPAVSND 1520
WD40-rpts
Query 1521 LSIVSKLKLLSSQPRWKRITQKLIRDRRKKRVPKKSESADLEECKMEREGTNEEPPAPLSPAPVDKKQTTVKSAKQDKWQ 1600
WD40-rpts
Query 1601 PLLNTIGSVQKYRWLRHSVQGSFSQSSLMSTIVEFSLKEEPLDVEKIRKCLLKQLERAEVRLEGIDTMLKLASKNFLLPS 1680
WD40-rpts
Query 1681 VQYAMLCGWQRVIPEGTNIGEPLADCLKDVDLIPPFNRMLLEVTFGKLYAWSIQNVRNILLEASVKFKELGVQPVPLQTI 1760
WD40-rpts
Query 1761 TNENPAGPSLGTIPQARFLLAMLHMLTLKHGANSLSLLLNSGILALTQSVLRLIGPSCDSSEEELTSVAHGGSATVLEES 1840
WD40-rpts
Query 1841 RKETAPTPLPASGPELAAMMKISTRVMRGPDWKWGDQDGPSPGLGRVIGELGEDGWIRVQWDTGSTNSYRMGKEGKYDLK 1920
WD40-rpts (__________________WD 1_________________)
Query 1921 LAEPPPATQPATEDSDTEDDTEGEVMEKCAHPTAIMLTSTVNLLKTLSLSSGIHAEVMQVDAVSTLCGLLRILVESGAND 2000
WD40-rpts
Query 2001 KTGCSSHKLVSREQHRSWCTLGFIRSIALMPQMCSTLSSSAWINLLIRIVEGHQSFTAITLQRQILALRLLQAVLPSWDK 2080
WD40-rpts
Query 2081 TERSQDMKFLVEKLFGFLGSLLSTCSSDLPLLREGSMRRRKSRPQASLTATHSSTLAEEIVTVLRTLHSLSQWNALINEY 2160
WD40-rpts
Query 2161 INSQLSGIGDVMAGRHTEVALLEDYLPNAEAAAVGSLMAVLAVIGGIDGRLRLGGRVVHEEYGEGTVTRITPKGRITVQF 2240
WD40-rpts
Query 2241 HEMRNCKVCLLSQLKPLHMIPFSVQNLPFAEPMLMVWAQLVNLAGSKLEKQRMKKSLSRGLTADQVDVHLLRCQQLRLYI 2320
WD40-rpts
Query 2321 LKAARALLSHQDKLRQILSQAAVVDVSPNPTEDQCASSPDVGDLSPEGPQPPLILLQQLLSASTQPSPIKAIFHRQELEA 2400
WD40-rpts
Query 2401 AALAVCQYLAVESTHPSSPLFEDSSSSEATTPVTVQHMRPPKQKKHKTSPVPPAPIVLQLMEMGFQRKNIEFALKSLSGT 2480
WD40-rpts
Query 2481 TGASGVPGVEALVGWLLDHPDVLITDLSDAETVSDEYSDEEVLEELEEPEPAFPVPPGVVVTESQTFKKRSDFQSNDDYA 2560
WD40-rpts
Query 2561 VYVRENIQVGMMVRCCRTYEEVYEGDVGKVIKLDRDGLHDLNVQCDWQQKGGTYWVRYIHTELLGFPPQSSPSHIKIGDK 2640
WD40-rpts
Query 2641 VRVKPSVTTPKYKWGSVTHRSVGVVKAFSANGKDVIVDFPQQSHWTGLLSEMELVPSVHPGVRCDGCQMFPINGPRFKCR 2720
WD40-rpts
Query 2721 SCDDFDFCESCFKTRKHNPRHSFGRINEPGQSPTFSGRSGKQLKRHHSSQRGMLIDEWSRVVKNLSVSSSVNQASRLIDC 2800
WD40-rpts
Query 2801 GEQCWQSSGSQGKHWIRLELFPDMLVHKLKMIVDPADSSYMPSLVVVSGGTSLNNLIELKTININPTDTVVSLLNDCTEY 2880
WD40-rpts
Query 2881 HRYIEVAIKQCRSSGIDCKIHGLSAVGRVRAEDEDLATVPFLASDNEEEEDEKTATGSMSRKRLSGLESAATIRTKVFVW 2960
WD40-rpts
Query 2961 GLNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTAEGKVYACGEATNGRLGLGLSSGTIPIPRQISALSN 3040
WD40-rpts
Query 3041 YVVKKVAVHSGGRHAMALTVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYSWG 3120
WD40-rpts
Query 3121 LGEYGRLGHGDNTTQLRPKLVKVLLGHRVVQVACGSRDAQTLALTDEGMVFSWGDGDFGKLGRGGSEGCNIPQNIERLNG 3200
WD40-rpts
Query 3201 QGVCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRKPQMVEGLRGKKIVHVAVGALHCLAVTETGQVFAWGDN 3280
WD40-rpts
Query 3281 DHGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVAWTTVDVTTPSVHEPVLFQTARDSLGASYLGVPSDSDPSLLS 3360
WD40-rpts
Query 3361 NKLNGVNNVKPNRPSLAKILLSLDGNLAKQQALSHVLSSLQIMYARDAVVGALMPSCMMPLECPSSSPVPPSDCSSASSP 3440
WD40-rpts
Query 3441 CEAEGPALPSESEERVSPHPWMDSKRGEVTTSEDATTPSSAVTPSTASASSRPFIPVTDDPGAASIIAETMTKTKEDSEN 3520
WD40-rpts
Query 3521 QSKAVGPEPQYLDEFTSLLIPDDTRVMVDLLKLAVSLRSGDKGKEVLSAVLSGMGTACPQVADMLLELCVTELEDVATDC 3600
WD40-rpts
Query 3601 QSGRLSSQPVVVESSHPYIDDTSTSGTVKIPGAEGLRVEFDRQCSTERRHDPLTIMDGANRIVSVRSGREWSDWSSELRI 3680
WD40-rpts
Query 3681 PGDELKWKFTSDGSVNGWGWRFTVYPIMPAAGPKDLLSDRCILSCPSMDLVTCLLDFRLNFASNRSIVPRLAASLAACAQ 3760
WD40-rpts
Query 3761 LSALAAGHRMWALQRLRKLLTTEYGQSININRLLGDTEGEARSMSFTGSALAALVKGLPEALQRQYEYEEPIVRGGKQLL 3840
WD40-rpts
Query 3841 HSPFFKVLVALACDLELDTLPCCAETHKWAWFRRYCTASRVSVALDKRSPLPRPFLDEVAKKIRELMADHENMNTLHESH 3920
WD40-rpts
Query 3921 DLFKREQDEQLVQWMNRRPDDWTLSAGGSGTIYGWGHNHRGQLGGIEGAKVKVPTPTEALATLRPVQLIGGEQTLFAVTA 4000
WD40-rpts
Query 4001 DGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIRKVAVNSGGKHCLALSSEGELYSWGEAEDGKLGHGNRSPCDRP 4080
WD40-rpts
Query 4081 RVIESLRGVEVVDIAAGGAHSACITASGELYTWGKGRYGRLGHGDSEDQLKPKLVEALQGHRVIDVACGSGDAQTLCLTD 4160
WD40-rpts
Query 4161 DDMVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQ 4240
WD40-rpts
Query 4241 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKINRVACGSAHTLAWSTSKPT 4320
WD40-rpts
Query 4321 NAGKLPAQVPMEYNHLQEIAIIGLRNRLLLLHHISELFCPCIPMFDLEGRLGETGHGVSVGFDTLRGILISQGKEAAFRK 4400
WD40-rpts
Query 4401 VVQATMVRDRQHGPVVELNRIQVKRSRSKGGLAGPDGTKSVFGQMCAKMSSFSPDSLLLPHRVWKVKFVGESVDDCGGGY 4480
WD40-rpts
Query 4481 SESIAEMCEELQNGLTPLLIVTPNGRDESGANRDCFLLNPAAKSPLHISMFRFLGVLLGIAIRTGSPLSLYLAEPVWKQL 4560
WD40-rpts
Query 4561 AGMNLTIADLSEVDKDFIPGLMYIRDNEASAEEFEAMPLPFTVPSACGQEVQLSSKHSHISLENRSEYVRLAINYRLHEF 4640
WD40-rpts
Query 4641 DEQVSAVREGMARVVPVPLLSLFTGYELETMVCGSPDIPLHLLKSVATYKGVEPTAPLIQWFWEVMESFSNTERSLFLRF 4720
WD40-rpts
Query 4721 VWGRTRLPRTIADFRGRDFVVQVLDKYNPPDHFLPESYTCFFLLKLPRYSCKLVLEEKLKYAIHFCKSIDTDDYARIALS 4800
WD40-rpts
Query 4801 GEPAADDSSDDSDNEDADSFASDSTQDYLTGH 4832
WD40-rpts
 1 WD40-repeats found in QUERY=ENSDARP00000098322 (Len=4832): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 43 1862-1902 2.90 234.39 0.04236 22.5% 9.05Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1862-1902 ISTRVMRGPDWKWGDQDGPSPGLGRVIGELGEDGWIRVQWD WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKV-WD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |