Input parameters:

  Query = ENSDARP00000098255 (Len=892)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000098255, Len=892):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADGAVNFGASMNQSCLTSRAKKANNNSTSVPANTRRKTRQSHRRDIHNRVVLEKVLGITASSSSALTCDPNTGLVAYPA 80  
WD40-rpts                                                       (_________________WD 1_________

Query       81 GCVIVILSPKKNKQTHIFNTSRKTFSALAFSQNGKYLVTGESGHMPCVRVWDVAERTQVAEVQCHKYGVSCVAFSPNGSY 160 
WD40-rpts      _______)   (__________________WD 2_________________)   (__________________WD 3__

Query      161 IVSVGYQHDRTVSVWEWKKGTVIASNKVSSRVLGVSFSEDNSYFVTAGNRHVKFWYLDASKERRVNSTVPLIGRSGLLGE 240 
WD40-rpts      _______________)(_________________WD 4_________________)                (_______

Query      241 HQNSQFCGLACGRGSMASSTYCITHTGLLCQFNSNRQLDSWVDLKTTSAQCLSVSGTFVFCGCADGTVRVFSPQDLRYIT 320 
WD40-rpts      __________WD 5________________) (_________________WD 6_________________)        

Query      321 TLHRPHCLGVDVSQGTQPGHLFSANPEAQYPDTLALTFDPVTKHLTCVYNDHSVYVWDVRDIRNVGKVYSALYHSGCVWS 400 
WD40-rpts                  (____________________WD 7____________________)(_____________________

Query      401 VETYPELEDPSAACLSPGSFLTCSSDNTIRLWRSESPQSHSAALGLRHNLYSQDIVRIVYVDDDTQYLKAEAEKAEGGAG 480 
WD40-rpts      ____WD 8________________________)   (_______________WD 9______________)(________

Query      481 QDGKSGIRVLGISPDGQHLAAGDRSGNLRIFGLQFMDELQKIEAHDSEVLCLAFSPAETGLHLLASASRDRLIHIFDMDS 560 
WD40-rpts      __________WD10_________________)   (__________________WD11__________________)   

Query      561 KCNLVQTVYDHSASITAVKFTGLNSELCMVSCGADKSVYFRSAEKTSDGLVFSRSHHIVEKTTLYDMDLDATRTHTAIAC 640 
WD40-rpts       (__________________WD12_________________)(_____________________WD13____________

Query      641 QDRNIRVYNVKSGKMKKCFKGSMNDDGTLLKVQLDPSGMFLATSCSDKNICVFDYESGECVATLFGHSEIVTGMKFSQDC 720 
WD40-rpts      ________)   (__________________WD14__________________)   (_________________WD15_

Query      721 RHLITVSGDSCVFVWRLDSQMTNSMRKRLAERKQQAGLRLQRAPTKQEVIRRETYITVPCNALTHMEEDGLMAEVNPEDG 800 
WD40-rpts      _______________)     (__________________WD16_________________)                  

Query      801 LEDCRTPDRLDSTDASLDSVVLQTNGKMPMWVRRLGGEGEKDGTGAANRVQYQPQGRWAVQSDPLAIRTVLEMKSNQLPL 880 
WD40-rpts                                      (_________________WD17_________________)        

Query      881 SHTPSRVMGEEE 892 
WD40-rpts                  

17 WD40-repeats found in QUERY=ENSDARP00000098255 (Len=892):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    50-88       6.41  379.28  0.00048       10.0%     49.23
  WD 2:  Seg  9    92-132      7.29  415.87  0.00015       25.0%     55.95
  WD 3:  Seg 13   136-176      8.03  446.22  6.0e-05       35.0%     57.54
  WD 4:  Seg 17   177-216      6.05  364.38  0.00076       25.0%     55.33
  WD 5:  Seg 22   233-271      4.56  303.16  0.00510        7.5%     50.35
  WD 6:  Seg 26   273-312      7.45  422.58  0.00013       17.5%     54.50
  WD 7:  Seg 32   333-378      7.07  406.54  0.00021       20.0%     42.79
  WD 8:  Seg 35   379-433      6.09  366.13  0.00072       25.0%     55.76
  WD 9:  Seg 39   437-471      4.75  310.78  0.00403       15.0%     38.64
  WD10:  Seg 43   472-512      7.94  442.72  6.7e-05       22.5%     49.01
  WD11:  Seg 46   516-557      7.49  424.26  0.00012       32.5%     56.34
  WD12:  Seg 50   562-602      6.83  396.96  0.00028       22.5%     53.64
  WD13:  Seg 54   603-649      5.93  359.82  0.00088        7.5%     55.94
  WD14:  Seg 58   653-694      7.11  408.56  0.00019       25.0%     57.78
  WD15:  Seg 62   698-736      9.79  519.08  6.3e-06       42.5%     59.15
  WD16:  Seg 66   742-782      3.61  263.85  0.01719        5.0%     33.19
  WD17:  Seg 74   833-872      7.77  435.47  8.4e-05       15.0%     42.14

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   50-88     RVV-------LE-K-------VLGITAS---SSSALTCDPNT---G----------LV--AYPA---G--CVIVILS
   WD 2   92-132    -NK-------QT-H-------IFNTSRK---TFSALAFSQNG---K----------YL--VTGE--SGHMPCVRVWD
   WD 3  136-176    -RT-------QV-A-------EVQCHKY---GVSCVAFSPNG---S----------YI--VSVGYQHD--RTVSVWE
   WD 4  177-216    WKK------GTV-I-------ASNKVSS---RVLGVSFSEDN---S----------YF--VTAG---N--RHVKFWY
   WD 5  233-271    -GR-------SG-L-------LGEHQNS---QFCGLACGRGS---M----------AS--STYC--IT--HTGLLCQ
   WD 6  273-312    NSN-------RQ-L-------DSWVDLK---TTSAQCLSVSG---T----------FV--FCGC--AD--GTVRVFS
   WD 7  333-378    SQG-TQPGHLFS-A-------NPEAQYP---DTLALTFDPVT---K----------HL--TCVY--ND--HSVYVWD
   WD 8  379-433    VRD--IRNVGKV-Y-------SALYHSG---CVWSVETYPEL---EDPSAACLSPGSF--LTCS--SD--NTIRLWR
   WD 9  437-471    -PQ-------SH-S-------AALGLRH---NL----YSQDI---V----------RI--VYVD--DD--TQYLKAE
   WD10  472-512    AEK-------AEGG-------AGQDGKS---GIRVLGISPDG---Q----------HL--AAGD--RS--GNLRIFG
   WD11  516-557    -MD-------EL-Q-------KIEAHDS---EVLCLAFSPAETGLH----------LL--ASAS--RD--RLIHIFD
   WD12  562-602    -CN-------LV-Q-------TVYDHSA---SITAVKFTGLN---S----------ELCMVSCG--AD--KSVYFRS
   WD13  603-649    AEKTSDGLVFSR-S-------HHIVEKT---TLYDMDLDATR---T----------HT--AIAC--QD--RNIRVYN
   WD14  653-694    -GK-------MK-K-------CFKGSMNDDGTLLKVQLDPSG---M----------FL--ATSC--SD--KNICVFD
   WD15  698-736    -GE-------CV-A-------TLFGHSE---IVTGMKFSQDC---R----------HL--ITVS--GD--SCVFVWR
   WD16  742-782    --------------TNSMRKRLAERKQQ---AGLRLQRAPTK---Q----------EV--IRRE--TY--ITVPCNA
   WD17  833-872    RRL-------GG-E-------GEKDGTG---AANRVQYQPQG---R----------WA--VQSD--PL--AIRTVLE

   WD40 Template    TGE-------CL-R-------TLSGHTS---GVTSVSFSPDG---K----------RL--VSGS--ED--GTIKVWD