Input parameters:

  Query = ENSDARP00000097904 (Len=1215)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000097904, Len=1215):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNFEGLDPGLGDYAPGLHGGLEPGLDSSLDPRLDPALLQGVEIDPDGLAVSESVHIVEGMYSELHSVAAEVGIPVTATHF 80  
WD40-rpts                                                                     (________________

Query       81 DLQEELLWMGNHRGHASSFFGPTMGRYSSFQVHMTDDIRHIQSMDTGVLFLTKNNLRCLTRGGFIMFDYPMEEGADMHSL 160 
WD40-rpts      WD 1_______________)                                                            

Query      161 ILTENNTLLMGGLQNYVAELDLTTVQETQKFTVEVPGVAIMRQTSRFFFCGHTSGKVSLRDLRTFKMEHEFDAFSGSLSD 240 
WD40-rpts                                                                             (________

Query      241 FDIHGNLLAACGFSSRGLNGLSCDRFLMVYDLRMMRAVTPLQVHVDPLFLRFIPTYTSRLAIISQTGQCQFCEPTGLASL 320 
WD40-rpts      _________WD 2_________________)                                          (______

Query      321 ADIFHVNTVGQLLMSFDVSSSKQALSFGDSGGCVHLWSSAPEVSYNSYSRDTELALPCLVDSLPQMDWNHELMPLSLLPM 400 
WD40-rpts      ______________WD 3___________________)                                          

Query      401 PLTSTEPLLSDWPTALIAPSPRRAPPVDPEILRTMKTVGFIGYAPNPRTRPRNQQVPYKIKDVELDYDSYNQVPESPIGR 480 
WD40-rpts                                                                                      

Query      481 DEEPHLYMVPKKYRKVTIKYSKLGLEDFDFKHYNRTLFAGLEPHIPNAYCNCMIQVKYFLEPIRCLVQNHLCQKEFCLAC 560 
WD40-rpts                                                                                      

Query      561 ELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALGLILADSDEQTGKARLGRLIQSWNRFILAQLHQETLEQEGPQAYR 640 
WD40-rpts                                                                                      

Query      641 GASSSVLSSSGESVISRLFGCEVENSSLCCCGKETVRSSLTLLFTMHYPETEKKIEEYEFVDILRKSICLEQSTQAWCDN 720 
WD40-rpts                                                                                      

Query      721 CEKYQPTVQTRNIRCLPDVLVINCEVNSAKEAEFWKAQTEYVFNKALKKEAAEPPKPKEPLPTEWCLDFREELCNVEGLT 800 
WD40-rpts                                                                                      

Query      801 FDTQAEDMRHVWIPLSLRMCISKAQGLEVSSLTEGEEVRLTSRYFKHGLTESEEAEGVSIYDLFVTVSHVQDTRTGGNMV 880 
WD40-rpts                                                                                      

Query      881 AHIKVGETYHQRKEGVTHQQWYLFNDFLIEPIDKAESVQFDVNWKVPAVLYYIKRNYHTKFDLRIKNPIEASVLLTEASL 960 
WD40-rpts                                                                                      

Query      961 ARKQRKSHATFIPLMVSEMPQVGDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVRGQGQNEGVPFIDDYI 1040
WD40-rpts                                                                                      

Query     1041 STQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDTGVRFVGHGLQKDFRVINLMVPKDQVIDTVYLFHM 1120
WD40-rpts                                                                                      

Query     1121 PRKRMISLRFLAWYFLDLNIQGETHDSIEDARTALQLYRKYLELSHNGGQEEFRKVLKALYEKGRKLDWKVPDIDSADGQ 1200
WD40-rpts                                                                                      

Query     1201 GSPKSTAVFPSVMGL 1215
WD40-rpts                     

3 WD40-repeats found in QUERY=ENSDARP00000097904 (Len=1215):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    64-100      3.02  239.27  0.03650       15.0%     44.87
  WD 2:  Seg 18   232-271      3.13  244.08  0.03152       15.0%     17.48
  WD 3:  Seg 24   314-358      3.71  268.01  0.01512       15.0%     44.52

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   64-100    ---L-----HSVAAEVGIPVTATHFDLQEELLWMGNHRGHASSFF
   WD 2  232-271    DAFS-----GSLSDFDIHGNLLAACGFSSRGLNGLSCDRFLMVYD
   WD 3  314-358    PTGLASLADIFHVNTVGQLLMSFDVSSSKQALSFGDSGGCVHLWS

   WD40 Template    TGEC-----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD