WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000097777 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000097777 (Len=3182) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000097777, Len=3182): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPPTKQQEPDAEMDRVSKENGELSASGESAESIELKASQINSDKNEDLKEDNDLEEVLREQLIQLDTINQQSPEQREQEL 80
WD40-rpts
Query 81 SRLLLLFIQVSESGSVLDDLDLQSLALQVGEALVSHVQQRVAEKPAEEARYELEQFFQRSEVKSNQGWLLLKSISFLSNR 160
WD40-rpts
Query 161 DTEVGVMIKTGLPAALVKSLYLFVALPPRKENSDSSPKDVKEDLKCSFQDTLIQGFLQLCRHVCFVEVLLETQELSSVII 240
WD40-rpts
Query 241 SLTLLWDQCSSSWRQQASRVLRSVSAAQAHNTVSALQASNCMKICIQNMHKISEDVPAHVLAEVAVSVFSFVKDSYAINP 320
WD40-rpts
Query 321 ALFEEFENNDGYDILQTIILRCEEEVTAEHYLAVQDLLGLIGSFTLFGKTELKVAICVSNPQPSNFRFDPTLTTGSTVKN 400
WD40-rpts
Query 401 LTAFKIIQSSFMRSSNTVICSQILRTIQMIWSWEKANFFLLEWTLQSLAQLAECVWQKSPPVHLIFFELLETVIFQLSYI 480
WD40-rpts
Query 481 PHETLKKVQAMVKQGSSGIFNVAALDCFYRLIMNSGLLSEVLSDGGLMEQLLFELKRRAKIIRKAGVAVNEDEEKADDYQ 560
WD40-rpts
Query 561 KMLTTNILNVVAALALQSVRNTVFIRDLGMIPYVKIFLDVEQFRSPALCILEQLAEVNPEEYMSTAIGALCSSTESEIKL 640
WD40-rpts
Query 641 KQDLLQSIMKVLENPNSWNAFRTAGGFTGLLSIVVDMEGSLLETPAGPWASLSRQSLVELLLFTLHTIAFAVHIHPVNAH 720
WD40-rpts
Query 721 FFHTVGVCEKLGEALLHLGCFQKGDPVESDRDSSAYRTFQQFVEVVEKPGPQLPAPLGDCVKLLGFLEQFATGVSLAADP 800
WD40-rpts
Query 801 CTGLQDNNEAGEIQIIDSGQTPEESTNKDEAFNHVRAPSVSVVSIESGRIYGNFTILHPGAVKLIMTLLPSIYCPSDPCL 880
WD40-rpts
Query 881 SEELQLAVAHHVQTLVKSERNRQIMCEFGLLSTLLTHCKDILIDNSHSLHLPIVRILEKLASQSMDQKCLRHFLCLGDPL 960
WD40-rpts
Query 961 MCCGENQPSVTLEEASCTNQTKDSEENNKKSLKRAMKRSFSLLKTPLDSGMVVPLHRIISLVSITSPRNFQPHKVSISPS 1040
WD40-rpts
Query 1041 FVEFDMTDSGYGCLFLPSLATVKGVSADFISTGGLGTDCRGFPPSAGLSFSCWFMICRFSSACESHPVRLLTVVRHMSRA 1120
WD40-rpts
Query 1121 EQQFSCLTVSISASDGCLVISTEEEAYQFLDMMEPEVQTPSTLPTSVRFKCAKHLIPGQWHHLCLVMAKGIKKSCLVTVY 1200
WD40-rpts
Query 1201 LNATAIGTGKIKYIQPFPGQSISMDPSAVIDVCGIIGTPSLWKQHAALVWRVGPTYLFEEVLSADQVETIYGQGTKYIGN 1280
WD40-rpts
Query 1281 YLALNVQGCKTDGTMSHTKMVSPERISFAINPAVSTITTVVDIRDTYNEVDCRLIAKEMGITSRDNCTPVFLAHNISQHL 1360
WD40-rpts
Query 1361 SGTSRTIGAALVGCFGVRTFKSYSASSSFQYIGGPAAILSLVAMASDDSSLYASIKVLLSVLETNPAMEQEMKRTNGYKL 1440
WD40-rpts
Query 1441 LSFLLKMKVQLISNRIFQLILAIVGTMELGIVPVCIPNVCAFQDVLCDFEVWQKAPDNLDVCVLNHLTDILKSSSGSQQN 1520
WD40-rpts
Query 1521 ADIMHRLNMINKLLILLHDPNVTCRKVSVICTIIRSLLEEHFNTTDIKRLGLFLVHSLLPPTLNEQNTFSDLDFDDQSQG 1600
WD40-rpts
Query 1601 WSQTPGRSVWIRNQLLSMLSSLIFSNSSSINQEEVYFALGSDWFLLFLQGHIHTSTVMLVLTLLTHFLSFPNILAKFREG 1680
WD40-rpts
Query 1681 VSPGTLVETMDIPTSITDNLKCRSWSFECLSCICPGFEVLQKLLVNHIHLPQIYGALAALLIGKPNFQVPAGQVDVDMVL 1760
WD40-rpts
Query 1761 QSLIDSCGGKTEDVQLCEDAACVLLELIKVILTKPVTESADGWEVHYPGSVMQFFCLVNSLFPQDPLWTSPDFLSSLASA 1840
WD40-rpts
Query 1841 VFPFETPESSTGVQAVKDSSEGMGEPLLPSHPGRKQVCDFIRILLMDSLINIPAKDGLHPLMQLLEFSPDGVSQEQRQSF 1920
WD40-rpts
Query 1921 QTELLEFVMDIIHMTGQEEGHSTHVARDDQSKSKQEGKTAVLIENVSFFSKKLVQKVYSGMFVVEPQNLLVFIAEQIAVA 2000
WD40-rpts
Query 2001 LERAQGHREVTVSVLYKSLNRGLLYFLSRPRQTPAEQELIIQTLHILQEHWDVIMATYNANVHFINCLMHCLVLIRSGSF 2080
WD40-rpts
Query 2081 PEGFGCEVHKKPSRNIWRHLFPLKSSRVMSQTDIADSAEVESELMTLVESTWSRVMLERRQTLEEAYKIDLSAKSSGKEG 2160
WD40-rpts
Query 2161 QVSMADVSPLWEEQATKSWQLFIDSQKKKANNSHQKRPGLLSSALQSVQKRFGKDSVGSAEGFVLDMEAYWQTCETIFDS 2240
WD40-rpts
Query 2241 MLRSHIQMMHSENDRMAIQWLRIEEELLRERGLFGPGPGVFLKRGWVQDTAEGRNRTRSRIRRKQQRRSKKIPTLTSGLI 2320
WD40-rpts
Query 2321 QKNFVEESKGPVETDADSDPRILCEASGVVEEEPGLDCEHLTFFPVLNDASLTPDDFSEQCMDTQLILNELKPSEEVKAK 2400
WD40-rpts
Query 2401 HCVVVVSGHVVTEGALLFGKADLYICEGFTLTSTGDVCCRIHHQTNVRDSYICSMMNKEKNSVTPSCKRWSYDDIKEANF 2480
WD40-rpts
Query 2481 MRFLLEDNALEIFLKNGTSVFLVFFNNDHVNAYKRLCSVVSSLKGRGETVLNVRKTSAVEKTVLIKWQRGEISNFEYLMH 2560
WD40-rpts
Query 2561 LNTLAGRTYNDLMQYPIFPWVIADYESETLDLSSPATFRDLSKPMGAQTEKRKEKFIQRYLEVENNDGDLSAQCHYCTHY 2640
WD40-rpts
Query 2641 SSAIIVASYLVRMEPFSQTFLQLQGGTFDVPERMFHSIQNEWESASKDNMSDVRELIPEFFYLPDFLVNSNQFDFGCMQD 2720
WD40-rpts
Query 2721 GTPLNDVVLPPWAKGDPQEFIRVHREALESDYVSSRLHLWIDLIFGYRQQGMPAVEALNTFHPYFYTDKHDRASMKDPVM 2800
WD40-rpts
Query 2801 KSTMLGYINNFGQMPKQIFTKPHASRTPNKSTAGKETSVSSQITPFFFKLDKLKPSAQAVKEVSLGPVGQIVCKEKDVLV 2880
WD40-rpts
Query 2881 VEKNKLLIPPQLNTYFCWGSYDQTCSFGSYTGEKSFGVCESLSDWGEPVCAACPNNSTIITAGTSTVVCVWDVFISKDKL 2960
WD40-rpts
Query 2961 KHMRLKQTLYGHTDTVTCLVASEAHSMIISGSLDQTCILWDLEDLSYITQLPEHSSAVSALAINDLTGEIVSCAGTHLYL 3040
WD40-rpts (_________________WD 1________________)
Query 3041 WTMKGQLLASINTYYEPEGNILCCCFTQKHEWDPRNVIITGSADGVVRIWKTEYTRVQLPGHEECSVSQGHVLSSAPEEA 3120
WD40-rpts
Query 3121 DSGSWRWERHLVLCRELNRNQAISRRRCKNNPAITALGISRTHGTLLVGDAWGRVFGWSCES 3182
WD40-rpts (________________________WD 2_______________________)
 2 WD40-repeats found in QUERY=ENSDARP00000097777 (Len=3182): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 42 2963-3001 6.25 372.94 0.00059 37.5% 57.73 WD 2: Seg 57 3127-3179 2.97 237.20 0.03888 20.0% 48.02Multiple sequence alignment of 2 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2963-3001 -MRLK-------------QTLYGHTDTVTCLVASEAHSMIISGSLDQTCILWD WD 2 3127-3179 WERHLVLCRELNRNQAISRRRCKNNPAITALGISRTHGTLLVGDAWGRVFGWS WD40 Template TGECL-------------RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |