Input parameters:

  Query = ENSDARP00000096338 (Len=774)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000096338, Len=774):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYVQEKDQVPLQPGQSFKFTVLETLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYIMYYEMSYGLNIEMHKQAEI 80  
WD40-rpts                                                                                      

Query       81 VKRLSAICAQIIPFLSQEHQQQVVQAVERAKQVTMAELNAIIGVNGWPSIHLLSQQQQLQHLSHHTPGIPLTPHPSGLSL 160 
WD40-rpts                                                                                      

Query      161 GGTSSLLALTGALGVTAHLANKDERNHLDPEHLRDESCKQNFLSSTDSQAVEDRQGPSGVYSSQAGGDAKRRRCEEKDIL 240 
WD40-rpts               (___________________________________WD 1_______________________________

Query      241 QSHYDSDGDKSEDNLVVDVSNEEASSPVGSAPLSPHGNGLDRALPLRKELPGSPSPPTASPPHSPTPGKNKDTAQTEKSQ 320 
WD40-rpts      ____)            (_______________WD 2_______________)                           

Query      321 SPSSKSGNSSPSHHDPLTPGPPGPPGPSTSCLRLVNKPASSADPLALRSPLTMTPGSYPAHFGVVSHAGLNGELASPGGF 400 
WD40-rpts                                                                                      

Query      401 GGSLTLSPQISAAASAYTRSPMVAYESRSHLRPSGLSSSLPGSTSGKPAYSFHVSADGQMQPVPFPPDALLGPGIPRHAR 480 
WD40-rpts                                       (__________________WD 3__________________)  (__

Query      481 QIHTLSHGEVVCAVTISTSTRHVYTGGKGCVKVWDISQPGSKSPMAQLDCLNRDNYIRSCKILPDGRTLIVGGEASTLSI 560 
WD40-rpts      ______________WD 4________________)(_____________________WD 5___________________

Query      561 WDLATPTPRIKAELTSSAPACYALAISPDNKVCFSCCSDGNIVVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 640 
WD40-rpts      _)(___________________WD 6___________________)   (_________________WD 7_________

Query      641 DNTVRCWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVSKPDKYQLHLHESCVLSLKFAYCGKWFVST 720 
WD40-rpts      _______)(__________________WD 8_________________)(__________________WD 9________

Query      721 GKDNLLNAWRTPYGASIFQSKETSSVLSCDVSPDDKYIVTGSGDKKATVYEVVY 774 
WD40-rpts      _________)(__________________WD10_________________)   

10 WD40-repeats found in QUERY=ENSDARP00000096338 (Len=774):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   170-245      3.10  242.85  0.03273       27.5%     -5.09
  WD 2:  Seg  3   258-293      3.26  249.47  0.02673       17.5%     -27.46
  WD 3:  Seg  6   434-475      3.36  253.53  0.02361       25.0%     19.20
  WD 4:  Seg  8   478-515      6.02  363.27  0.00079       25.0%     53.05
  WD 5:  Seg 12   516-562      7.61  428.90  0.00010       25.0%     48.88
  WD 6:  Seg 15   563-606      8.34  459.02  4.0e-05       30.0%     56.07
  WD 7:  Seg 19   610-648      9.87  522.47  5.6e-06       35.0%     54.20
  WD 8:  Seg 23   649-689      6.88  398.86  0.00026       25.0%     52.61
  WD 9:  Seg 27   690-730      8.29  457.31  4.3e-05       30.0%     53.37
  WD10:  Seg 31   731-771      7.86  439.35  7.5e-05       37.5%     53.42

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  170-245    TG----A-------LGVTAHLANKDERNHLDPEHLRDESCKQNFLSSTDSQAVEDR-QGPSG--VYSSQAGGDAKRRRC-EEKDILQSHYD
   WD 2  258-293    DV---------------------------------------------------SNE-EASSP--VGSAPLSPHGNGLDR-ALPLRKELPGS
   WD 3  434-475    -S----G-------L------------------------------------SSSLP-GSTSGKPAYSFHVSADGQMQPVPFPPDALLGPGI
   WD 4  478-515    -H----A-------R------------------------------------QIHTL-SHGEV--VCAVTISTSTRHVYT-GG-KGCVKVWD
   WD 5  516-562    IS----QPGSKSPMA------------------------------------QLDCL-NRDNY--IRSCKILPDGRTLIV-GGEASTLSIWD
   WD 6  563-606    LATPTPR-------I------------------------------------KAELT-SSAPA--CYALAISPDNKVCFS-CCSDGNIVVWD
   WD 7  610-648    -Q----T-------L------------------------------------VRQFQ-GHTDG--ASCIDISNDGTKLWT-GGLDNTVRCWD
   WD 8  649-689    LR----E-------G------------------------------------RQLQQHDFTSQ--IFSLGYCPTGEWLAV-GMESSNVEVLH
   WD 9  690-730    VS----K------PD------------------------------------KYQLH-LHESC--VLSLKFAYCGKWFVS-TGKDNLLNAWR
   WD10  731-771    TP----Y------GA------------------------------------SIFQS-KETSS--VLSCDVSPDDKYIVT-GSGDKKATVYE

   WD40 Template    TG----E-------C------------------------------------LRTLS-GHTSG--VTSVSFSPDGKRLVS-GSEDGTIKVWD