Input parameters:

  Query = ENSDARP00000095605 (Len=1174)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000095605, Len=1174):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 NCSGHKHTRPSVYTLYDSFLLRFWIFRRFKCVWSSGGDRCRMIPVVPVESCTHVLAEFDCLDPLLSALRLDSGRIKCTCL 80  
WD40-rpts                                                                         (____________

Query       81 SVSRKWLALGTSAGGLHLIQRDGWKQKLILTHKEGSITQVSCCPHDEDFIAVATSQGLVVVWELHLERRGRPERASVSWE 160 
WD40-rpts      __WD 1_____________)   (_________________WD 2_________________) (_______________

Query      161 HRGVTVTSLCWDTVALRVFAGDMGGKVSCVRAGSSKLGKGSAFVIFPVQTVTTVDSRVVQLGYTDGHLVISSLSRCYLCD 240 
WD40-rpts      ______WD 3____________________)                                                 

Query      241 TEREKFWRVGNKERDGEFGACFLTQGLAGQRGQLVGCPAPLLFCARPGSRIWEASFSGEVLSTHQFKQLLAVPPLPLVSC 320 
WD40-rpts                                                                                      

Query      321 KNEPHFNPTQTNPQSLAFPRLLQFGDQNLLTWTDSAIYIFTPHSGQVLLWTEVKDVLEISVFRNDLFCLHGDGHLSHMSL 400 
WD40-rpts                                                                                      

Query      401 VSPDRCVERLMKRENWTIAATVCCMFQHAITTSKARKSLSIDRLEHLKAQLNSTSQQQLIGQLEEVISKLEPLDSACSSR 480 
WD40-rpts                                                                                      

Query      481 RSSISSHESFNVLDCGIYRVISRRGSQSDDDASSLANQSMLEEERLKEFSFTEEEQVDNDSASVRGEGDRSDLGLQFLPL 560 
WD40-rpts                                                                                      

Query      561 PFRSKPPRVALQAVRDSVSSFMKKTTEKINTLQMNADLWPRPDLREGVQGEVASTASPISEESEQELNTEESSSESELLE 640 
WD40-rpts                                                                                      

Query      641 LRAATKKAISQIQDPMVLLDPLCLSDVLQEWAPVLERALGPEDQILPVETTNPEEKTLEEEELVSSMSCCVVVQPEISTS 720 
WD40-rpts                                                                                      

Query      721 PAADPDESATHTEEEDFRESTPCSIAPVRAQFPPLANHVELIQLFSPKPLPPDLQADLSLLACLYLEMGCPGRGGMESVC 800 
WD40-rpts                                                                                      

Query      801 VFLRRFFFLLDQERVRRMCMLRYRENREVLKAYIAGMLEFTQASKVVEVIQKGDLLKSLRSLRELQPWNAPLLLSHLYRL 880 
WD40-rpts                                                                                      

Query      881 YEKHGEVAVRAYPQFYPTILPSDIMAMALPSHFLPYLDNLVQSRAEQQRLSFLGSLLQPETLRQDWLELALSHDAPQRED 960 
WD40-rpts                                                                                      

Query      961 TLTHDGQPRWHSHFFSWGYGRLLSLLIRLPADLASKQKMLDMCKAHGYWMGYLYLCRELQRRAEAFSAICRLDDMTLLEG 1040
WD40-rpts                                                                                      

Query     1041 DDGIVPQSLDEWVLLLQLSQQISASDESSLTSTKNSNGSCLDDANSNGDCSSGLSNGSTDWSIQVSPENIILRLVRVFGP 1120
WD40-rpts                                                                                      

Query     1121 DRALTALQEHGIPVDHSSRSTLVCDLLRMAEKRQRALIQSMLERCDRFLWSQHA 1174
WD40-rpts                                                            

3 WD40-repeats found in QUERY=ENSDARP00000095605 (Len=1174):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    68-100      3.03  239.98  0.03573       15.0%     42.46
  WD 2:  Seg  7   104-143      4.13  285.25  0.00888       22.5%     53.91
  WD 3:  Seg 11   145-191      3.80  271.56  0.01355       17.5%     51.01

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   68-100    --------------LRLDSGRIKCTCLSV-SRKWLALGTSAGGLHLIQ
   WD 2  104-143    -WK-------QKLILTHKEGSITQVSCCPHDEDFIAVATSQGLVVVWE
   WD 3  145-191    HLERRGRPERASVSWEHRGVTVTSLCWDT-VALRVFAGDMGGKVSCVR

   WD40 Template    TGE-------CLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD