Input parameters:

  Query = ENSDARP00000095457 (Len=1360)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000095457, Len=1360):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAVQNRNSVLILSGRERGARMLGSQRLLQQLVEDRTRWMKWQSQKVELPDNPRSTFLLAFSPDRNLVASTHVNHNIYITD 80  
WD40-rpts          (________________WD 1_______________)(_________________WD 2________________)

Query       81 VKTGKCLHSLVGHRRTPWCVTFHPTIPGLVASGCLDGEVRIWDLHGGSESWFTESNVAIASLAFHPTAQLLLIATNNELH 160 
WD40-rpts         (_________________WD 3_________________)  (________________WD 4______________

Query      161 FWDWSRPEPFAVVKTASETERVRLVRFDPLGHNLLTAIVNPSNQQNEDDSEVPMDSMEMALFRQRSLLRSPPVRRTPILH 240 
WD40-rpts      __)(___________________WD 5___________________)   (_________________WD 6________

Query      241 NFLHILSSRSSGAQANDQSRPAPEPREPPSIPRFQYPVRTEPADRPALQGCTQHLGLGCLCSRCAASRNLFTQNPTGLQP 320 
WD40-rpts      ________)(______________WD 7_____________)_________________WD 8_________________

Query      321 SDSTQPQTQSGPSAFSPAPSQTRTSDRPSAFSSVFSGTAGNSAHRGLLPLRTIDPLGSQVPSHLEAPGRLPGADWSGSLL 400 
WD40-rpts      _)                                                                              

Query      401 STGHEHGLGAIGVETSSGRGVVPPPRTSSSSMDLLSLRRFPDGSSSSPIYTSATEGRGLVLPGTEPNRGRPNDGTSSGHH 480 
WD40-rpts                                                                                      

Query      481 PFYDNTQRNNPASIRNVLQCNLSRYFMEYERMQELERPGGSREVAGGPGPMQELLTSSMDAERPGPSHNGSSHTGNGGAV 560 
WD40-rpts                                                                                      

Query      561 ATPSQNHPNRCRSCHNLLTFNHDTQRWERSGQTSSSSSSQEGPSWPLSVPPFEDPGQTARVEAQAPEMRPMELGEASSGL 640 
WD40-rpts                                                                                      

Query      641 QGQQPMGLVYNQETGQWESVYRQPTVSASSEAAEDALNPEVPVDNPDEDSLRRRLLESSLFPFSRYDMSSSRDHPIYPDP 720 
WD40-rpts                 (______________WD 9______________)                                   

Query      721 ARLSPAAYYAQRMIQYLSRRESIRQRSLQNRLRTLSNSQADSQSNNPSSVPPEASDGDYEDIEEPGDRTRHRMPRNARMS 800 
WD40-rpts                                                                                      

Query      801 APSLGRFVPRRFLLPEYLPYAGLFHERGQSGLATHSSINRVLAGASIGDGQSAVASNIANTTYRLQWWDFTKFDLPEISN 880 
WD40-rpts                                                                                      

Query      881 ATVNVLVPHCKIYNDASCDISADGQLLAVFIPSSQRGFADEGILAVYSLAPHNLGEMLYTKRFGPNAISVSLSPMGCYVM 960 
WD40-rpts                                                            (________________WD10_____

Query      961 VGLASRRILLHPTTDHMVAQVFRLQQPHGGETSIRMMFNVVYPMAPDQRRHVSINSARWLPEPGMGLAYGTNKGDLVICR 1040
WD40-rpts      ___________)                                                                    

Query     1041 PVDFRSDGDNPSDLNADSLFTINSSSRTRGVERPGTSRSGWRFDRDMGLMNAIGLQPRQAAPSVTSQGTQTPVVRLQNAE 1120
WD40-rpts                                                                                      

Query     1121 TQTERELPSASTFQNTHTTSRHTVQTASTSTERHTHPEMTHTLVQASVSEGSLNRTNLPATYHVESAAEPGTGEDALSRI 1200
WD40-rpts                                                                                      

Query     1201 RRLMAEGGMTAVVQRERSTTMASMGGFGNNIVVSHRIHRGSQTSVRTAQGGNPTPEMPAGLGVSTLFHTEPLVDSLEAPG 1280
WD40-rpts                                                                                      

Query     1281 PSGSSGAPLPTPFTNRSEFAGVSPMVESDLFGDRQPDDVQRRPSRGGLNMSNHSNNNNNDHSNSYSESRSRDYPDDLYGR 1360
WD40-rpts                                                                                      

10 WD40-repeats found in QUERY=ENSDARP00000095457 (Len=1360):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     5-41       3.34  252.76  0.02416       20.0%     44.29
  WD 2:  Seg  6    42-80       6.85  397.47  0.00027       20.0%     51.70
  WD 3:  Seg 10    84-123      8.27  456.19  4.4e-05       40.0%     52.69
  WD 4:  Seg 14   126-163      5.79  353.77  0.00106       17.5%     50.39
  WD 5:  Seg 18   164-207      5.76  352.56  0.00110       17.5%     52.49
  WD 6:  Seg 22   211-249      4.12  284.91  0.00898       12.5%     20.19
  WD 7:  Seg 25   250-282      2.96  236.92  0.03921        7.5%     -11.27
  WD 8:  Seg 26   281-322      3.35  252.92  0.02405       15.0%     -1.22
  WD 9:  Seg 30   652-685      2.91  234.83  0.04179        7.5%      2.72
  WD10:  Seg 35   935-972      2.99  238.28  0.03762       30.0%     32.83

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-41     NRN----SVLILSGRER--GARMLG---SQRLL-QQLVEDRTRWMKW
   WD 2   42-80     QSQ----KV-ELPDNPR--STFLLAFSPDRNLV-ASTHVNHNIYITD
   WD 3   84-123    -GK----CLHSLVGHRR--TPWCVTFHPTIPGLVASGCLDGEVRIWD
   WD 4  126-163    -GG----SESWFTESNV--AIASLAFHPTAQLL-LIAT-NNELHFWD
   WD 5  164-207    WSRPEPFAVVKTASETE--RVRLVRFDPLGHNL-LTAIVNPSNQQNE
   WD 6  211-249    -EV----PMDSMEMALF--RQRSLLRSPPVRRT-PILHNFLHILSSR
   WD 7  250-282    -----------SSGAQA--NDQSRPAPEPREPP-SIPRFQYPVRTEP
   WD 8  281-322    EPA----DRPALQGCTQHLGLGCLCSRCAASRN-LFTQNPTGLQPSD
   WD 9  652-685    ----------QETGQWE--SVYRQPTVSASSEA-AEDALNPEVPVDN
   WD10  935-972    -GE----MLYTKRFGPN--AI-SVSLSPMGCYV-MVGLASRRILLHP

   WD40 Template    TGE----CLRTLSGHTS--GVTSVSFSPDGKRL-VSGSEDGTIKVWD