Input parameters:

  Query = ENSDARP00000093519 (Len=605)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000093519, Len=605):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGNSLVLPIVLWSRNAPTHCISSLLVMEDLATIITGSHDGQICIWDMTPELEINPRALLFGHTASVTCLSKASAGSEKQ 80  
WD40-rpts             (_________________WD 1_________________)        (_________________WD 2___

Query       81 YLVSASESGEMCLWDVNDGRCIEFTKLACAHTGIQFYQFTIGTQREGRLLCHGHYPEILVMDATSLEVLYSLVSKISPDW 160 
WD40-rpts      ______________)         (________________WD 3________________)   (______________

Query      161 ISSMSIIRSHRTQEDTVVAVSVTGILKVWIITADVSRMQDLDPVFEEESKPIYCQGCQSISFCTFTQLSLLVVCSKYWRV 240 
WD40-rpts      ______WD 4___________________)             (_________________WD 5_______________

Query      241 FDAGDFSLLCSVSSENNQSWAGGEFIAADKVIIWTEDGCSYIYKLPASCLPASEHFRSNVGKKSEGSIPPLVYSIADQAD 320 
WD40-rpts      _)   (_________________WD 6________________)(_____________WD 7_____________) (__

Query      321 KQLLICPPVTRFFFGRREPFHKLLMQGDSAGRLTVWSIPDASPPIQQLTSATELQVSVSISLQEAFDKLLPAPAGIIDQL 400 
WD40-rpts      _______________WD 8_________________)                                  (________

Query      401 SVLPGASEPIKVTASVYIPSQGRLVCGREDGSIILVPATQTAIVQLLQGEHMLRRGWPPHRTLRGHRHKVTCLLYPHQVS 480 
WD40-rpts      ____________WD 9____________________)          (________________________WD10____

Query      481 PRYDQRSLVSGGVDFSVIIWDIFTGEMKHIFCVHGGEITQLIVPPENCSTRVQHCVCSVASDHSVGLLSLRERKCIMLAS 560 
WD40-rpts      ____________________)   (____________________WD11___________________)   (_______

Query      561 RHLFPIQVIKWRPCDDYLVVGCSDGSVYVWQMDTGEPHGSKVTVH 605 
WD40-rpts      __________WD12________________)              

12 WD40-repeats found in QUERY=ENSDARP00000093519 (Len=605):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-47       8.00  444.94  6.3e-05       27.5%     57.84
  WD 2:  Seg  6    56-95       7.46  422.74  0.00012       40.0%     46.26
  WD 3:  Seg  9   105-142      5.06  323.78  0.00269       17.5%     43.66
  WD 4:  Seg 13   146-190      5.51  342.16  0.00152       30.0%     56.43
  WD 5:  Seg 17   204-242      6.20  370.75  0.00063       15.0%     43.19
  WD 6:  Seg 21   246-284      7.32  417.22  0.00015       12.5%     55.26
  WD 7:  Seg 25   285-316      3.92  276.50  0.01164       10.0%     37.17
  WD 8:  Seg 28   318-357      8.35  459.53  4.0e-05       17.5%     56.94
  WD 9:  Seg 35   392-437      6.95  401.57  0.00024       35.0%     54.51
  WD10:  Seg 40   448-501      7.72  433.43  9.0e-05       42.5%     45.97
  WD11:  Seg 43   505-549      6.67  390.03  0.00034       17.5%     55.86
  WD12:  Seg 47   553-591      9.05  488.32  1.6e-05       27.5%     54.48

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-47     LP----IVL--------WSRNAPTHC--ISSLLVME------DL------A----TIITGSHDGQICIWD
   WD 2   56-95     P-------R--------ALLFGHTAS--VTCLSKAS------AG---SEKQ----YLVSASESGEMCLWD
   WD 3  105-142    -T----KLA--------CAHTGIQFY--QFTIGTQR------EG------R----LLCHGHYP-EILVMD
   WD 4  146-190    -L----EVL--------YSLVSKISPDWISSMSIIR------SH------RTQEDTVVAVSVTGILKVWI
   WD 5  204-242    -V----FEE--------ESKPIYCQG--CQSISFCT------FT------Q----LSLLVVCSKYWRVFD
   WD 6  246-284    -F----SLL--------CSVSSENNQ--SWAGGEFI------AA------D----KVIIWTEDGCSYIYK
   WD 7  285-316    --------------------LPASCL--PASEHFRS------NV------G----KKSEGSIPPLVYSIA
   WD 8  318-357    QA----DKQ--------LLICPPVTR--FFFGRREP------FH------K----LLMQGDSAGRLTVWS
   WD 9  392-437    APAGIIDQL--------SVLPGASEPIKVTASVYIP------SQ------G----RLVCGREDGSIILVP
   WD10  448-501    QG----EHMLRRGWPPHRTLRGHRHK--VTCLLYPHQVSPRYDQ------R----SLVSGGVDFSVIIWD
   WD11  505-549    -G----EMK--------HIFCVHGGE--ITQLIVPP------ENCSTRVQH----CVCSVASDHSVGLLS
   WD12  553-591    -R----KCI--------MLASRHLFP--IQVIKWRP------CD------D----YLVVGCSDGSVYVWQ

   WD40 Template    TG----ECL--------RTLSGHTSG--VTSVSFSP------DG------K----RLVSGSEDGTIKVWD