WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000093342 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000093342 (Len=2968) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000093342, Len=2968): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSERPVLAPGSASLTDREAPPAAAPPGSGQQVVTGSVTGDMMVSGSGAVVLPAGVINPSVPIRNIKMKFAVLIGLIQVG 80
WD40-rpts
Query 81 EVSNRDIVETVLNLLVGGEFDLEMNFIIQDAESIACMVELLEHCDVTCQAEIWSMFTAILRKSVRNLQTSTEVGLIQQVL 160
WD40-rpts
Query 161 QKMSAVDDMIADLLVDMLGVLASYSITVKELKLLFSMLRGDAGVWPRHAIKLLSVLNQMPQRHGPDTFFNFPGRSAAAIA 240
WD40-rpts
Query 241 LPPIAKWPYQNGFTLNTWFRMDPLNNINVDKDKPYLYCFRTSKGIGYSAHFVGNCLIVTSLKSKGKGFQHCVKYDFQPRK 320
WD40-rpts
Query 321 WYMISIVHIYNRWRNSEIRCYVNGQLVSYGDMAWHVNTNDSYDKCFLGSSETADANRVFCGQLGAVYVFSEALNPAQIFA 400
WD40-rpts
Query 401 IHQLGPGYKSTFKFKSESDIHLAEHHKQVLYDGKLASSISFTYNAKATDAQLCLESSPRENASIFVHSPHALMLQDVKAI 480
WD40-rpts
Query 481 VTHSIHSAIHSIGGIQVLFPLFSQLDYRQPNDSPVETTVCATLLAFLVELLKSSVAMQEQMLGGKGFLVIGYLLEKSSRV 560
WD40-rpts
Query 561 HITRAVLEQFLSFAKYLDGLTHGAPLLKQLCDHVLFNAAIWIHTPAKVQLSLYTYLSAEFIGTATIYSTIRRVGTVLQLM 640
WD40-rpts
Query 641 HTLKYYYWASNPLESSGITPKGLDGPRPSQKEIISLRAFMLLFLKQLILKDRGVKEDELQSILNYLLTMHEDENIHDVLQ 720
WD40-rpts
Query 721 LLVALMSEHPASMIPAFDQRNGIRVIYKLLASKSESIRVQALKVLGYFLKHLGHKRKVEIMHTHSLFTLLGERLMMHTST 800
WD40-rpts
Query 801 VTITTYNTLYEILTEQVCTQVVHKPHPEPDSTVKIQNPMILKVVATLLKSSSPSAELMEVRRLFLSDMIKLFSNSRENRR 880
WD40-rpts
Query 881 CLLQCSVWQDWMFSLGYINPKNPEEQKITEMVYNIFRILLYHAIKYEWGGWRVWVDTLSIAHSKVTYEAHKEYLAKMYEE 960
WD40-rpts
Query 961 YQRQEEENIKKGKKGSVSTISGLSAQPTSVNGNLEIREIDDTSQTQTPESEVDYGENADSRILLAEAKVPESEAESSAAG 1040
WD40-rpts
Query 1041 VRVEVHDLLVDIKAEKVEATEVKLDDLDLSPEVLGGGGGMENGPLVEVDSLLDSAYCAAVHKLNGSLVPKEEESVVVGLT 1120
WD40-rpts
Query 1121 EDDGNMGPLITLADEKDSVPSNNGFLFPKVDEKLLPSLASTEPLVLPSPDQPPCSTTPHTSSASDDLSLLAHMTSCGSDL 1200
WD40-rpts
Query 1201 VQTPSGLEDDGFKLQSSLADISTLAEAEAQAAARTAECLEQESGDARAGKSSGDAASTTSDTERSDDGKDKEMKKIQTTA 1280
WD40-rpts
Query 1281 TTQALHGRMSGQMERDLRVDLGFRGMPMTEEQRRQFSPGPRTTMFRIPEFKWSPMHQRLLTDLLFALESDVHMWRSHSTK 1360
WD40-rpts
Query 1361 SVMDFVNSNENIIFVHNTIHLISQMVDNIIIACGGILPLLSAATSPSSSKVSANPTELENVEATQGMSSETAVTFLSRLM 1440
WD40-rpts
Query 1441 AMVDVLVFASSLNFSEIEAEKNMSSGGLMRQCLRLVCCVAVRNCLECRQRQRDRGSKTSLPISKTQENLQTAASASKTVI 1520
WD40-rpts
Query 1521 QNVPRNLSPIKDPDRLLQDVDINRLRAVVFRDVDDSKQAQFLALAVVYFISVLMVSKYRDILEPQREIGRSSSLSGRSIR 1600
WD40-rpts
Query 1601 QEINSPTSTENPSLFSDGVRGERQAMTPLEDLPLEASLPHTDSGIGEEQVTGALNGSDLGTDHHSGLVGGSGGPDAMSEL 1680
WD40-rpts
Query 1681 LCTLSSEVRKSSESLLESPLGVEVLKPAASISSISQANKGINVKEILKSLVAAPVEGAEAGPEPQPYHPDPALKREAAAM 1760
WD40-rpts
Query 1761 LPMQFHSFDRSVVVPVKKPPPGSLAVNTVGTPTSGAVPSSGSTPNIFAAATATPKSMINTTGATDSASSSSSSSSSFVNG 1840
WD40-rpts
Query 1841 ATSKNLPAVQTVAPMPEDTVENMSAFCEVDQCPLRTRLTPPELKSFSSLTGFQTAPRDAGQFLSITTKLERALEKVAPLL 1920
WD40-rpts
Query 1921 REIFVDFAPFLSRTLLGSHGQELLIEGLVCMKSSTSVVELVMLLCSQEWQNSIQKNAGLAFIELINEGRLLCHAMKDHIV 2000
WD40-rpts
Query 2001 RVANEAEFILNRQRAEDVHKHAEFESNCAQYAADRREEEKMCDHLISAAKHRDHVTANQLKQKILNILTNKHGAWGTMSQ 2080
WD40-rpts
Query 2081 SQLHDFWRLDYWEDDLRRRRRFVRNAFGSTHTDVTLKSLEEYGPEEEEGMKSKKSFRSHSVVSQNPETELMLEGDDDAVS 2160
WD40-rpts
Query 2161 LLQEKEIDNLAGPVVLSTPAQLVAPVIVARGTLSITTTEIYFEVDEDDPTFKKIDAKVLGYTEGLHGKWMFSEIRAVFSR 2240
WD40-rpts
Query 2241 RYLLQNTGLEVFMANRTSVMFNFPDQATVKKVVYSLPRVGVGTSYGLPQARRISLATPRQLFKSSNMTQRWQRREISNFE 2320
WD40-rpts
Query 2321 YLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEDLDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDGAAPHHYSSL 2400
WD40-rpts
Query 2401 YSTAASTLYWLVRIEPFTTFFLNCNENKFDHPDRTFSGIARSWRSCQRDTSDVRELIPEFYYLPEMFVNSSGYDLGVRED 2480
WD40-rpts
Query 2481 RTAVCDVELPVWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLSYEGSINLDTITDPQLR 2560
WD40-rpts
Query 2561 ESMEAQIQSFGQAPSQLLIEPHPPRSSAMHLCFLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLSIPAAVTV 2640
WD40-rpts
Query 2641 TCSRLFAVNRWHNTVGLRGAPGYSLEQAHHLPIEMDSLIANNSGISKRQITDLVDQSIQINTHCFVVTADNRYILACGFW 2720
WD40-rpts
Query 2721 DKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLLWYWSGRHHIIGDNPNNSDYPAPRAVLTG 2800
WD40-rpts (___________________WD 1__________________) (_________________
Query 2801 HDHEVVCVSVCAELGLVISGAKEGPCLVHTITGDLLRALEGPENCLRPRLISVSSEGHCIIYYERGQFCNFSINGKLLAQ 2880
WD40-rpts ____WD 2_____________________) (______
Query 2881 MEINDSTRAILLSSDGQNLVTGGDNGVVEVWQACDFKQLYIYPGCDAGIRAMDLSHDQRTLITGMASGSIVAFNIDFNRW 2960
WD40-rpts ___________WD 3________________) (_________________WD 4________________)
Query 2961 HYEHQNRY 2968
WD40-rpts
 4 WD40-repeats found in QUERY=ENSDARP00000093342 (Len=2968): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 36 2732-2774 5.36 336.26 0.00183 32.5% 55.56 WD 2: Seg 41 2783-2830 4.24 289.97 0.00768 25.0% 53.05 WD 3: Seg 49 2874-2912 5.18 328.51 0.00233 30.0% 56.69 WD 4: Seg 53 2916-2954 4.23 289.58 0.00777 22.5% 56.71Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2732-2774 -GK--------LTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLLWY WD 2 2783-2830 GDNPNNSDYPAPRAVLTGHDHEVVCVSVCAE----LGLVISGAKEGPCLVHT WD 3 2874-2912 NGK--------LLAQMEINDS-TRAILLSSD----GQNLVTGGDNGVVEVWQ WD 4 2916-2954 -FK--------QLYIYPGCDAGIRAMDLSHD----QRTLITGMASGSIVAFN WD40 Template TGE--------CLRTLSGHTSGVTSVSFSPD----GKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |