Input parameters:

  Query = ENSDARP00000092538 (Len=1129)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000092538, Len=1129):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKFNIRKVLDGLTAVSSPSPSPQLGAKENELIPETLQSEHFQLCKTVRHGFPYQPSSMAFDPVQKILAIGTQSGALRLF 80  
WD40-rpts      (________________WD 1________________)     (________________WD 2________________

Query       81 GRPGVECYCQHESGAAVIQLQFLINEGALVSALADDSIHLWNLRQKRPAVLHSLKFNKERITFCHLPFQSKWLYIGSERG 160 
WD40-rpts      )  (_________________WD 3________________)     (_________________WD 4___________

Query      161 NIHIVNVESFTLSGYTIMWNKAIELSSKAHPGPVVHISDNPMDEGKLIIGFESGIVVLWDLKSKRADYRYTYDEAIHSVA 240 
WD40-rpts      _____)               (_________________WD 5________________)  (_________________

Query      241 WHHEGKQFICSHSDGTLTIWNLKSPAKPIQTITPHGKQPKDGKKPEPCKPILKVEYKTTRAGDPFMIFSGGLSYDTVGRR 320 
WD40-rpts      WD 6________________)    (_________________WD 7________________)                

Query      321 PCLTVMHGKSTAVLEMDYPIVDFLTLCETPYPNDFQEPYAVVVLLEKDLVVIDLAQNGYPIFENPYPMMIHESPVTCCEY 400 
WD40-rpts                     (_________________WD 8_________________)                         

Query      401 LADCPVDLIPALYSVGSRQKRQGYSKKEWPVSGGNWGLGTQSYPEIIITGHADGSVKFWDASAIMLQVLYKLKTAKVFEK 480 
WD40-rpts                           (_________________WD 9________________)                   (

Query      481 ARCKEEKPSTEIVDEDPFAIQLMSWCPESRMLCVAGVSAHVIIYRFSKQEITTEVVQQLLELRLQHELNDLESPEGGGDQ 560 
WD40-rpts      ____________________WD10____________________)  (_________________WD11___________

Query      561 TPAPPTPSTSPSPQTAGPQTHTSSSSNSSDGMRDNVPCLKVRSSPLKQSPGYQVELVVQLVWVSGEPPQQISSLAINSCY 640 
WD40-rpts      ______)                                                        (_____________WD1

Query      641 GLVVFGNSNGLAVVDYLQKTVLLNLGTVELYGSNDPYQRQPRSPRKSRQPSGGLCDINEGSATSEDRCKSPTSVLMSNHQ 720 
WD40-rpts      2_____________)                                                                 

Query      721 HFYNGGGRGAKMSRKLSLPTELKPDLDNRDNSFSRSRSSSVTSIDKETREAITSFYFCETYTRKADGGLTPSLWVGTSLG 800 
WD40-rpts                                                                                      

Query      801 TVLAISLNMPPAGEQRLLQPVIVSPCGTLFRLKGSVVRMAFLDSTGSILPSPFEPWYEPNAPANGEERDKVRKRRPVSVS 880 
WD40-rpts                                                                                      

Query      881 PSTSQELNENQYAVVCSEKQAKVVILPSQTCVFKHNITETSFVLRADVVQMNAGICVACFCANGHIMTLSLPGLRPLLDV 960 
WD40-rpts                                                                                      

Query      961 NYLPLTDMRIARTFCFTNLGQALYLTSPTEIQRITYSQEVCENLQEMLGELFTPVETPEAPNRGFFKGLFGGGAQSLDRM 1040
WD40-rpts                                                                                      

Query     1041 ELFGETGAGKAPRSLAQHIPGPGGIEGMKGAASGIVGDLARARIALDERGQKLSEVEERTAAMMASADSFSKHAHEMMLK 1120
WD40-rpts                                                                                      

Query     1121 CKDKKWYQF 1129
WD40-rpts               

12 WD40-repeats found in QUERY=ENSDARP00000092538 (Len=1129):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       4.83  314.01  0.00365       12.5%     35.63
  WD 2:  Seg  5    44-81       5.92  359.37  0.00089       22.5%     45.89
  WD 3:  Seg  8    84-122      6.35  376.89  0.00052       22.5%     56.52
  WD 4:  Seg 12   128-166      6.05  364.61  0.00076       25.0%     57.71
  WD 5:  Seg 17   182-220      5.51  342.38  0.00151       27.5%     47.01
  WD 6:  Seg 20   223-261      6.63  388.72  0.00036       20.0%     55.48
  WD 7:  Seg 24   266-304      4.01  280.21  0.01038       10.0%      4.74
  WD 8:  Seg 30   336-375      4.39  296.12  0.00634        7.5%     19.08
  WD 9:  Seg 38   422-460      6.07  365.25  0.00074       20.0%     30.71
  WD10:  Seg 42   480-525      4.99  320.91  0.00294       10.0%     48.00
  WD11:  Seg 45   528-567      5.88  357.55  0.00094        7.5%     12.14
  WD12:  Seg 47   624-655      2.83  231.45  0.04630       15.0%     40.63

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MKKF--------NIRKVLDGLTAVSSPS-PSPQLGAKENELIPETLQ
   WD 2   44-81     --LC------KTVRHGFPYQPSSMAFDP-VQKILAIGTQSGALRLFG
   WD 3   84-122    -GVE------CYCQHESGAAVIQLQFLI-NEGALVSALADDSIHLWN
   WD 4  128-166    -PAV------LHSLKFNKERITFCHLPF-QSKWLYIGSERGNIHIVN
   WD 5  182-220    --------AIELSSKAHPGPVVHISDNPMDEGKLIIGFESGIVVLWD
   WD 6  223-261    -SKR------ADYRYTYDEAIHSVAWHH-EGKQFICSHSDGTLTIWN
   WD 7  266-304    -AKP------IQTITPHGKQPKDGKKPE-PCKPILKVEYKTTRAGDP
   WD 8  336-375    MDYP------IVDFLTLCETPYPNDFQE-PYAVVVLLEKDLVVIDLA
   WD 9  422-460    QG-Y------SKKEWPVSGGNWGLGTQS-YPEIIITGHADGSVKFWD
   WD10  480-525    KARCKEEKPSTEIVDEDPFAIQLMSWCP-ESRMLCVAGVSAHVIIYR
   WD11  528-567    KQEI------TTEVVQQLLELRLQHELN-DLESPEGGGDQTPAPPTP
   WD12  624-655    -------------SGEPPQQISSLAINS-CYGLVVFGNSNG-LAVVD

   WD40 Template    TGEC------LRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD