Input parameters:

  Query = ENSDARP00000092536 (Len=748)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000092536, Len=748):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKFNIRKVLDGLTAVSSPSPSPQLGAKENELIPETLQSEHFQLCKTVRHGFPYQPSSMAFDPVQKILAIGTQSGALRLF 80  
WD40-rpts      (________________WD 1________________)     (________________WD 2________________

Query       81 GRPGVECYCQHESGAAVIQLQFLINEGALVSALADDSIHLWNLRQKRPAVLHSLKFNKERITFCHLPFQSKWLYIGSERG 160 
WD40-rpts      )  (_________________WD 3________________)     (_________________WD 4___________

Query      161 NIHIVNVESFTLSGYTIMWNKAIELSSKAHPGPVVHISDNPMDEGKLIIGFESGIVVLWDLKSKRADYRYTYDEAIHSVA 240 
WD40-rpts      _____)            (__________________WD 5__________________)  (_________________

Query      241 WHHEGKQFICSHSDGTLTIWNLKSPAKPIQTITPHGKQPKDGKKPEPCKPILKVEYKTTRAGDPFMIFSGGLSYDTVGRR 320 
WD40-rpts      WD 6________________)    (_________________WD 7________________)                

Query      321 PCLTVMHGKSTAVLEMDYPIVDFLTLCETPYPNDFQEPYAVVVLLEKDLVVIDLAQNGYPIFENPYPMMIHESPVTCCEY 400 
WD40-rpts                     (_________________WD 8_________________)(_________________WD 9___

Query      401 LADCPVDLIPALYSVGSRQKRQGYSKKEWPVSGGNWGLGTQSYPEIIITGHADGSVKFWDASAIMLQVLYKLKTAKVFEK 480 
WD40-rpts      _____________)(____________________WD10____________________)                   (

Query      481 ARCKEEKPSTEIVDEDPFAIQLMSWCPESRMLCVAGVSAHVIIYRFSKQEITTEVVQLLELRLQHELNDLESPEGGGDQT 560 
WD40-rpts      ____________________WD11____________________)                                   

Query      561 PAPPTPSTSPSPQTAGPQTHTSSSSNSSDGMRDNVPCLKVRSSPLKQSPGYQVELVVQLVWVSGEPPQQISSLAINSCYG 640 
WD40-rpts                                                                    (_____________WD12

Query      641 LVVFGNSNGLAVVDYLQKTVLLNLGTVELYGSNDPYQRQPRSPRKSRQPSGGLCDINEGSATSEDRCKSPTSVLMSNHQH 720 
WD40-rpts      _____________)                                                                  

Query      721 FYNGGGRGAKMSRKLSLPTELKPDLANR 748 
WD40-rpts                                  

12 WD40-repeats found in QUERY=ENSDARP00000092536 (Len=748):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       5.72  350.93  0.00116       12.5%     40.04
  WD 2:  Seg  5    44-81       6.97  402.48  0.00023       22.5%     45.01
  WD 3:  Seg  8    84-122      7.14  409.59  0.00019       22.5%     57.10
  WD 4:  Seg 12   128-166      7.13  409.10  0.00019       25.0%     57.25
  WD 5:  Seg 18   179-220      7.07  406.85  0.00020       27.5%     51.13
  WD 6:  Seg 22   223-261      7.65  430.64  9.8e-05       20.0%     55.14
  WD 7:  Seg 26   266-304      5.10  325.16  0.00258       10.0%     -2.06
  WD 8:  Seg 32   336-375      5.92  359.33  0.00089        7.5%     16.92
  WD 9:  Seg 35   376-414      2.90  234.38  0.04236        7.5%     24.46
  WD10:  Seg 38   415-460      6.47  381.93  0.00044       20.0%     31.92
  WD11:  Seg 43   480-525      6.14  368.15  0.00068       10.0%     49.01
  WD12:  Seg 48   623-654      3.66  265.96  0.01611       15.0%     40.03

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MKK------F---------NIRKVLDGLTAVSSPS-PSPQLGAKENELIPETLQ
   WD 2   44-81     --L------C------KT-VRHGFPYQPSSMAFDP-VQKILAIGTQSGALRLFG
   WD 3   84-122    -GV------E------CY-CQHESGAAVIQLQFLI-NEGALVSALADDSIHLWN
   WD 4  128-166    -PA------V------LH-SLKFNKERITFCHLPF-QSKWLYIGSERGNIHIVN
   WD 5  179-220    WNK------A------IELSSKAHPGPVVHISDNPMDEGKLIIGFESGIVVLWD
   WD 6  223-261    -SK------R------AD-YRYTYDEAIHSVAWHH-EGKQFICSHSDGTLTIWN
   WD 7  266-304    -AK------P------IQ-TITPHGKQPKDGKKPE-PCKPILKVEYKTTRAGDP
   WD 8  336-375    MDY------P------IV-DFLTLCETPYPNDFQE-PYAVVVLLEKDLVVIDLA
   WD 9  376-414    -QN------G------YP-IFENPYPMMIHESPVT-CCEYLADCPVDLIPALYS
   WD10  415-460    VGSRQKRQGY------SK-KEWPVSGGNWGLGTQS-YPEIIITGHADGSVKFWD
   WD11  480-525    KAR------CKEEKPSTE-IVDEDPFAIQLMSWCP-ESRMLCVAGVSAHVIIYR
   WD12  623-654    --------------------SGEPPQQISSLAINS-CYGLVVFGNSNG-LAVVD

   WD40 Template    TGE------C------LR-TLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD