Input parameters:

  Query = ENSDARP00000088806 (Len=1194)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000088806, Len=1194):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLGQRNSVCILSSRERGAPGLASYRVLQQLVEEKTQRMKWQSQKVELPDSPRSTFLLAFSPDRSLMASTHVNHNIYITE 80  
WD40-rpts                                                (________________WD 1________________)

Query       81 VKSGKCVHSLVGHRRTPWCLTFHPIIPGLIASGCLDGEVRIWDLHGGSESWLTESNSAIASLAFHPTAQLLLIATNNEVH 160 
WD40-rpts         (_________________WD 2_________________)  (________________WD 3______________

Query      161 LWDWSRKEPFTVVKTASETERVRLVRFDPLGHYLLTAIVNPSNQPNDDDPEIPMDSVEMPHLRQRSFLQSQPARRTPILH 240 
WD40-rpts      __)(___________________WD 4___________________)                      (__________

Query      241 NFLHILTSRNSVPQAGGAHSASTDGSSDSSGPYTLMCVQPLGMVCFCSRCSAARVPSPPDEDPSDSASLEAQAHTFSSAR 320 
WD40-rpts      ________WD 5__________________)        (________________WD 6________________)   

Query      321 TEPLQMSRFSVESRAANRSSAFSSVYGGGSNMRNHSSSSGRRGVTGMAPVPHFRQHPPGREGGGRHPGADWTVSGLNGQS 400 
WD40-rpts                       (_________________WD 7_________________)                       

Query      401 SSMTPQRTGASSVSLLSVLRQQETSFQSPVYTSASDRWGSTPGTSSSRHRPPEEEGQSSSSSIHSVLRCNLYRYFMDYEG 480 
WD40-rpts                                                                                      

Query      481 TQDTVQPLDGSRQDQQTQEMLNNNMDPEQPGPSHYQSPYSGENPPHSHMNRCRVCHNLFTYNQGSRRWDRTGQPSSTERN 560 
WD40-rpts                                                                                      

Query      561 TPWQPSSSAFHSVAPVSQSNEHLLEHRPIESTPNTPEPHVPFSQRTDTGQHEEQAVGLVFNQETGQLERVYRQSASSRSA 640 
WD40-rpts                                                                                      

Query      641 NISQGALNQEMPEDTPDNDYLRRRLLESSMMSLSRNGTSGSRDHPIYPDPARLSPAAYYAQRMIQYLSRRDSVRQHSHRP 720 
WD40-rpts                                                                                      

Query      721 PSRPRPLSSNPSSLSPSPVPNAESSEVDFEEFEENGSRYRTPRNARMSAPSLGRFVGTRRFLLPEFLPYAGIFHERGQPG 800 
WD40-rpts                                                                                      

Query      801 LATHSSVNRVLAGAVIGDGQSAVASNIANTTYRLQWWDFTKFDLPEISNASVNVLVPNCKIYNDASCDISADGQLLAVFI 880 
WD40-rpts                                                                                      

Query      881 PSSQRGFPDEGILAVYSLAPHNLGEMLYSKRFGPNAISVSLSPMGRYVMVGLASRRILLHQISDHMVAQVFRLQQPHAGE 960 
WD40-rpts                                                                                      

Query      961 TSMRRVFDVVYPMAPDQRRHVSINSARWLPDPGLGLAYGTNKGDLVICRPVDVHSDGSSTSEHSERMFTINNGGGVGPSS 1040
WD40-rpts                                                                                      

Query     1041 SRSGDRAGSSRTDRRSRRDIGLMNGVGLQPQPPAASVTSQGTQTQNQRLQHAETQTDRDLPDDPQQPSTSQGSQVTDAVG 1120
WD40-rpts                                                                                      

Query     1121 QSGAEYVSRIRRLMAEGGMTAVVQREQSTTMASMGSFGNNIIVSHRIHRGSQTGADAQNRTRLSPIPGPSSGAP 1194
WD40-rpts                                                                                

7 WD40-repeats found in QUERY=ENSDARP00000088806 (Len=1194):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    43-80       6.58  386.33  0.00039       17.5%     49.02
  WD 2:  Seg  9    84-123      7.87  439.58  7.4e-05       32.5%     53.88
  WD 3:  Seg 13   126-163      6.32  375.92  0.00053       22.5%     49.51
  WD 4:  Seg 17   164-207      5.56  344.34  0.00142       20.0%     42.58
  WD 5:  Seg 21   230-271      5.65  348.19  0.00126       25.0%     34.38
  WD 6:  Seg 26   280-317      3.48  258.36  0.02035       12.5%     14.22
  WD 7:  Seg 29   338-377      3.69  267.29  0.01546       10.0%     13.06

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   43-80     SQK----V--E--LPDSPRSTFLLAFSPDRS-LMASTHVNHNIYITE
   WD 2   84-123    -GK----CVHS--LVGHRRTPWCLTFHPIIPGLIASGCLDGEVRIWD
   WD 3  126-163    -GG----SESW--LTESNSAIASLAFHPTAQ-LLLIAT-NNEVHLWD
   WD 4  164-207    WSRKEPFTVVK--TASETERVRLVRFDPLGH-YLLTAIVNPSNQPND
   WD 5  230-271    SQP----ARRTPILHNFLHILTSRNSVPQAG-GAHSASTDGSSDSSG
   WD 6  280-317    PLG----MV----CFCSRCSAARVPSPPDED-PSDSASLEAQAHTFS
   WD 7  338-377    RSS----AFSS--VYGGGSNMRNHSSSSGRR-GVTGMAPVPHFRQHP

   WD40 Template    TGE----CLRT--LSGHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD