Input parameters:

  Query = ENSDARP00000088166 (Len=507)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000088166, Len=507):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDEDEAPVVKRSRIFYGSLEEKEKERLSREGTSTTAKDAVKAGIEAGHINISSGESMEMEERVSERQAEVLAEFERRKR 80  
WD40-rpts                                                                                      

Query       81 ARQITVSTDDVEVKACLRALGEPITLFGEGPAERRERLRNVLSVLGPDALKKSKKEDEKAKRTHEEYQQTWYHEGPTSLK 160 
WD40-rpts                                                                                      

Query      161 EARLWLAKYSLPRAVKRLDAARAQKEIPESTRTIKQQELHKNLRNVNNFCSQIGDDRPISYCQFSPNSKLLVTASWSGLC 240 
WD40-rpts                                                   (_________________WD 1_____________

Query      241 KLWKVPDCTLIRTLRGHNTNVGAISFHPQATLTLEESDVNMASCAADGSVKLWSLDSDEPIADIEGHSMRVARVTWHPSG 320 
WD40-rpts      ___)   (_____________________WD 2____________________)   (_________________WD 3_

Query      321 RFLGTTCYDHSWRLWDLEVQEEILHQEGHSKGVHDLHFHPDGSLAGTGGLDSFARVWDLRTGRCVMFLEGHIKEIYSINF 400 
WD40-rpts      _______________)   (_________________WD 4________________)   (_________________W

Query      401 SPNGFHVATGSGDNACKVWDLRQRRCIYTIPAHQNLVSSVKFQPNDGHYLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKV 480 
WD40-rpts      D 5________________)   (_________________WD 6_________________)   (_____________

Query      481 MGVDLSPDGQLIATCSYDRTFKLWMSE 507 
WD40-rpts      ____WD 7________________)  

7 WD40-repeats found in QUERY=ENSDARP00000088166 (Len=507):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   206-244      8.20  453.19  4.9e-05       27.5%     52.87
  WD 2:  Seg  7   248-294      8.16  451.91  5.0e-05       35.0%     53.62
  WD 3:  Seg 11   298-336      9.33  500.06  1.1e-05       27.5%     54.28
  WD 4:  Seg 15   340-378      9.59  510.93  8.1e-06       35.0%     54.63
  WD 5:  Seg 19   382-420     10.64  554.08  2.1e-06       42.5%     55.29
  WD 6:  Seg 23   424-463      8.86  480.81  2.1e-05       40.0%     54.80
  WD 7:  Seg 27   467-505      9.81  520.08  6.1e-06       40.0%     52.44

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  206-244    VNNFCSQIGDDRPISYCQFSP-NSK--------LLVTASWSGLCKLWK
   WD 2  248-294    CTLIRTLRGHNTNVGAISFHP-QATLTLEESDVNMASCAADGSVKLWS
   WD 3  298-336    DEPIADIEGHSMRVARVTWHP-SGR--------FLGTTCYDHSWRLWD
   WD 4  340-378    QEEILHQEGHSKGVHDLHFHP-DGS--------LAGTGGLDSFARVWD
   WD 5  382-420    GRCVMFLEGHIKEIYSINFSP-NGF--------HVATGSGDNACKVWD
   WD 6  424-463    RRCIYTIPAHQNLVSSVKFQPNDGH--------YLLTGAYDNTAKIWT
   WD 7  467-505    WSPLKTLAGHEGKVMGVDLSP-DGQ--------LIATCSYDRTFKLWM

   WD40 Template    GECLRTLSGHTSGVTSVSFSP-DGK--------RLVSGSEDGTIKVWD