Input parameters:

  Query = ENSDARP00000087578 (Len=785)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000087578, Len=785):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRPTHSGTMSKLKNKKRHLEENEEEQLPIFDKDSGEDGHLDDGDEDPADLSDSEESVFSGLEDSGSDDEDDDEDDDEDDD 80  
WD40-rpts                                                                                      

Query       81 DKDGSEEKSSDAEEDKADDDDGDLKLSAKDDVKPQVDSQNSKEKKKKKRKGKSVLKDGGEEDVASGRDEALKITSQVDEY 160 
WD40-rpts                                                                                      

Query      161 DHDTSDEEDIRNTVGNIPMEWYKDYPHIGYDLDGKKIFKPIRNKDELDEFLDKMENPDYWRTVQDKMTGADIRLSDEQVD 240 
WD40-rpts                                                                                      

Query      241 LVHRLQQGKFGDVNFNEYEPAVDFFSNEVMIHPVTNRPQDKRSFIPSLIEKEKVGKLVHAIKMGWIKPRRPKETTPQYYD 320 
WD40-rpts                                                                                      

Query      321 LWAKEDPNSILGRHKMHVPAPKMKLPGHEESYNPPPEYLLSEEERLAWAAQDPEDRKLSFLPQKFSCLRAVPAFSRFIHE 400 
WD40-rpts                                                                                      

Query      401 RFERCLDLYLCPRQRKMRVNVNPEDLIPKLPKPKDLQPFPTTQSLVYRGHSSLVRSISVSPSGQWLVSGSDDCTVRFWEV 480 
WD40-rpts                           (__________________________WD 1__________________________) 

Query      481 STARCLKTVQVGGAVKGVAWNPNPSICLVAVSYEDSVLLLNPALGDRLLCTATDQLISSYAEPEEVKEQPVQWLVSEGEG 560 
WD40-rpts        (_________________WD 2________________)(_________________WD 3_________________

Query      561 HEQGHRLVLKHPKAVRQVTWHAKGDYLACVLPDSSSSVQVLIHQVSKRRTQNPFRKSKGLVQCVSFHPVRPYFFVATQRY 640 
WD40-rpts      )(_________________WD 4________________)       (________________WD 5____________

Query      641 VRVYNLIKQELTKKLMANCKWISSMAIHPGGDNVICGSYDCRLAWFDLDLSTKPYKVLRHHKKALRSVSFHSHYPLLASG 720 
WD40-rpts      ____)   (_________________WD 6________________)    (_________________WD 7_______

Query      721 SDDGSVIVCHGMVYNDLLQNPLIVPVKVLKGHSITHDLGVLDVTFHPTQPWVFSSGADATIRLYT 785 
WD40-rpts      _________)            (___________________WD 8__________________)

8 WD40-repeats found in QUERY=ENSDARP00000087578 (Len=785):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   422-479      8.39  461.03  3.8e-05       47.5%     52.22
  WD 2:  Seg 11   483-521      3.79  271.25  0.01368       22.5%     55.22
  WD 3:  Seg 15   522-561      2.90  234.43  0.04230       12.5%     17.25
  WD 4:  Seg 17   562-600      4.20  288.19  0.00811       20.0%     43.04
  WD 5:  Seg 21   608-645      3.75  269.66  0.01437       15.0%     46.35
  WD 6:  Seg 24   649-687      6.90  399.72  0.00026       22.5%     55.43
  WD 7:  Seg 28   692-730      7.51  424.99  0.00012       32.5%     46.31
  WD 8:  Seg 31   743-785      5.36  336.00  0.00184       30.0%     47.13

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  422-479    NPEDLIPKLPKPKDLQPFPTTQSLVYRGHSS----LVRSISVSPSGQW-LVSGSDDCTVRFWE
   WD 2  483-521    -ARCL------------------KTVQVG-G----AVKGVAWNPNPSICLVAVSYEDSVLLLN
   WD 3  522-561    PALGD------------------RLLCTATD----QLISSYAEPEEVK-EQPVQWLVSEGEGH
   WD 4  562-600    -EQGH------------------RLVLKHPK----AVRQVTWHAKGDY-LACVLPDSSSSVQV
   WD 5  608-645    -RRTQ------------------NPFRKSKG----LVQCVSFHPVRPY-FFVAT-QRYVRVYN
   WD 6  649-687    -QELT------------------KKLMANCK----WISSMAIHPGGDN-VICGSYDCRLAWFD
   WD 7  692-730    -TKPY------------------KVLRHHKK----ALRSVSFHSHYPL-LASGSDDGSVIVCH
   WD 8  743-785    -IVPV------------------KVLKGHSITHDLGVLDVTFHPTQPW-VFSSGADATIRLYT

   WD40 Template    TGECL------------------RTLSGHTS----GVTSVSFSPDGKR-LVSGSEDGTIKVWD