Accession: ENSDARP00000087355 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSDARP00000087355 (Len=1929)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000087355, Len=1929):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGSEDDRDDFEHRSVMQEEDDLEEELSENDAPKVKKKKKAKKSSRESKGSKRNRSRREEIGISSPEPGEGPDLDDGEED 80  
WD40-rpts                                                                                      

Query       81 RSESEGSDYTPGRKKKKRASTAKDKKRNSSAAERNSAASKRREPEEEEDEDDDDSEPKSSSQLLDTWGMEDIDHIFTEED 160 
WD40-rpts                                                                                      

Query      161 YRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPLRGSATSLVAAASVETPPETPTSASAAQISPEST 240 
WD40-rpts                                                                                      

Query      241 PAAPVRKAKTKEGKGPNARKKSKPAPKPQEKKVKTKKVAPLKIKLGGFNSKRKRSSSEEDDVDVDSDFDDGSINSVSVSN 320 
WD40-rpts                                                                                      

Query      321 GSNSRSSRSSAKKKPKKKTKKADEDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGTWSCPHCEK 400 
WD40-rpts                                                                                      

Query      401 MGIQWEAREDASEGEEDNEAGGEAEEDDHHMEFCRVCKDGGELLCCDSCPSSYHIHCLNPPLPEIPNGEWICPRCTCPSM 480 
WD40-rpts                                                                                      

Query      481 KGKVQKILTWRWTEPPPPTPVPRPSDLPTDAPDPTPLAGRPEREFFVKWQNMSYWHCSWVTELQLEIHCQVMFRNYQRKN 560 
WD40-rpts                                                                                      

Query      561 DMDEPPPIDFGGEGEEEKSDKRKKKDPTYARMEEKYYRFGIKMEWMVIHRILNHSVDKKNNCHYLIKWRDLTYDQATWEL 640 
WD40-rpts                                                                                      

Query      641 EDMDLPDYDTYKLQYWNHRELMMGDEGKPGKKIKIKGKMRKLDRPPENPVVDPTIKFERQPDYLDTTGGTLHPYQLEGLN 720 
WD40-rpts                                                                                      

Query      721 WLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAV 800 
WD40-rpts                                                                                      

Query      801 IRENEFSFENNAIRGGKKPSKMKKEASVKFHVLLTSYELITIDTAVLGSIDWACLVVDEAHRLKNNQSKFFRILNNYPLQ 880 
WD40-rpts                                                                                      

Query      881 HKLLLTGTPLQNNLEELFHLLNFLTPERFSNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKHMPSKTELIVR 960 
WD40-rpts                                                                                      

Query      961 VELSPMQKKYYKFILTRNFEALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPAAAMEAAKMPNGMYEGGGLTKSSGKLLLL 1040
WD40-rpts                                                                                      

Query     1041 QKMLRKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGITGGMRQEAIDRFNAPGAPQFVFLLSTRAGGLGINL 1120
WD40-rpts                                       (__________________________WD 1________________

Query     1121 ATADTVVIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQEL 1200
WD40-rpts      _________)                                                                      

Query     1201 DDILKFGTEELFKDEGEGENKEGQEDSSVIHYDDKAIDRLLDRNQDATDDTELQSMNEYLSSFKVAQYVEEEVQREIIKQ 1280
WD40-rpts                                                                                      

Query     1281 EESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQEDRDWQDDQSDGQSDYSVASEEGDEDFDERSEANS 1360
WD40-rpts                                                                                      

Query     1361 RRPNRKGLRNDKDKPLPPLLARVSGNIEVLGFNARQRKAFLNAVMRYGMPPQDAFTTQWLVRDLRGKSEREFKAYVSLFM 1440
WD40-rpts                                                                                      

Query     1441 RHLCEPGADGAESFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGQWSMPWMMELSENKTTSTAGSHPDSPSKTP 1520
WD40-rpts                                                                                      

Query     1521 TTGTPSDTQPNTPAPDGVPKAEDAGKDADKEKVKNGDGEKEANENKNSEVIAVPDEDGRAASASEEKEKGKEEKEKTPES 1600
WD40-rpts                                                                                      

Query     1601 SSEAEKADGKQEEKEEENAKSGDSEEKTDDTDKPKGSEADKETSDAKGEKKDDEPEKMDTTPVTDEKKGQKDEKDSGKTE 1680
WD40-rpts                                                                                      

Query     1681 EAGKLPNGESAKDSAAGAGIEERKKAKTRFMFNIADGGFTELHSLWQNEERAATVTKKTNEIWHRRHDYWLLAGIIQYLL 1760
WD40-rpts                                                                                      

Query     1761 MQHGYARWQDIQNDVRFAILNEPFKGEINRGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMTEDPSHPSMALNTR 1840
WD40-rpts                                                                                      

Query     1841 FSEVECLAESHQHLSKESMSGNKPANAVLHKVLKQLEELLSDMKADVTRLPATIARIPPVAVRLQMSERNILSRLASRGP 1920
WD40-rpts                                                                                      

Query     1921 DTQSQQVRH 1929
WD40-rpts

1 WD40-repeats found in QUERY=ENSDARP00000087355 (Len=1929):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14  1074-1130     2.89  234.11  0.04271       20.0%     30.54

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1074-1130   EGYKYERIDGGITGGMRQEAIDRFNAPGAPQFVFLLSTRAGGLGINLATAD-TVVIYD

   WD40 Template    TGECLRTLSGHTS------------------GVTSVSFSPDGKRLVSGSEDGTIKVWD