Accession: ENSDARP00000087334 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSDARP00000087334 (Len=1953)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000087334, Len=1953):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGSEDDRDRFEPMGDDIEEQISETDTPKSKKKKKAKKSRESRTSKRQKVIREEIAVSSPEVMEAIRMAEGEEEEDRVMR 80  
WD40-rpts                                                                                      

Query       81 SESEGSDYAPSKKKKKRSSSSKDRKKGSAGEKAGGSGGKSKRKEPEPEEEDDDDDDDGQEPKSSSQLLADWGMKDIDYTF 160 
WD40-rpts                                                                                      

Query      161 TQEDYNSLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPMRGSASANAALAAANVAAAVESMVTKVDAG 240 
WD40-rpts                                                                                      

Query      241 GGGGPALATAPPTTTAAPVAAPPPPQQPPAVPLRKAKTKEGKGPNARRKTKPTPKPQDKKSKAKKVAPLKIKLGNFKRKR 320 
WD40-rpts                                                                                      

Query      321 SSSGEEDDGESDFDSFSVSDGSNSRSSRSKNKKAKSSKKKKKMDEDADGYETDHQDYCEVCQQGGEIILCDTCPRAYHMV 400 
WD40-rpts                                                                                      

Query      401 CLDPDMERAPEGTWSCPHCEKEGIQWEAREESSEGEEENDDGRRDDGDVEEEDDHHMEFCRVCKDGGELLCCDTCPSSYH 480 
WD40-rpts                                                                                      

Query      481 LHCLNPPLPDIPNGEWICPRCLSPPLKGKVQKVLTWRWGEAPPPMPVPRPADLPAEAPDPPPMIGRKEREFFVKWCNKSY 560 
WD40-rpts                                                                                      

Query      561 WHCSWVQELQLELNCQVMFRNYQRKTDMEEPPNLEMGAEGDEDKSCKRKNKDPFYARMEDKYGRFGVKIEWLFIHRILNH 640 
WD40-rpts                                                                                      

Query      641 SVDKKNNVHYLIKWRDLPYDQSTWESEDMDVPDFETYKQHYWNHRELMLGEEGRPGKKMKKVKVRKTERPPANPVVDPTI 720 
WD40-rpts                                                                                      

Query      721 KFDRQPDYLDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINW 800 
WD40-rpts                                                                                      

Query      801 EREFEMWAPDMYVVTYVGDKDSRAVIRENEFTFEDNAIRGGKKASKMKKEAAVKFHVLLTSYELITIDQAILGSIDWACL 880 
WD40-rpts                                                                                      

Query      881 VVDEAHRLKNNQSKFFRVLNNYPLQHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADIAKEDQIKKLHDML 960 
WD40-rpts                                                                                      

Query      961 GPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKYILTRNFEALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPTAAT 1040
WD40-rpts                                                                                      

Query     1041 EAPKMPNGMYDGSALTKASGKLMLLFKMLKKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGVTGGMRQEAID 1120
WD40-rpts                                                                (_____________________

Query     1121 RFNAPGAPQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVEERITQVAKK 1200
WD40-rpts      _____WD 1_________________________)                                             

Query     1201 KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEQLFKDELGEGDNKEEDSSVIHYDDKAIDRLLDRNQDATEDTELQSM 1280
WD40-rpts                                                                                      

Query     1281 NEYLSSFKVAQYVVKDEDEEEEDVDREIIKQEESVDPDYWEKLLRHHYEQQQEDLARHLGKGKRPRKPVNYNDCSQEDRG 1360
WD40-rpts                                                                                      

Query     1361 SRRDWQDDQSDNQSDYSVASEEGDEDFDERSEAANSRRPSRKGLRNDKDKPLPPLLARVGGNIEVLGFNARQRKAFLNAV 1440
WD40-rpts                                                                                      

Query     1441 MRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQE 1520
WD40-rpts                                                                                      

Query     1521 FEHVNGQWSMPWMKELEESKRAAAIAAGEDPKTPSTGTPADTQPNTPAPEDLSKTEDIKELEEKTEGDGEKEVKGSRQED 1600
WD40-rpts                                                                                      

Query     1601 EIIEIPDEGEKSPSSAKKEEKTDKESEASSEKDGGSRENEKDGEKEKSAESKENMSSDVKADGSDATNSGDSTKTKEESS 1680
WD40-rpts                                                                                      

Query     1681 EEKMDTSPASDEKKELKDEKDGVKPEDSAKLQNGENAKETSGGGDGVSEEKKKAVKQRFMFNIADGGFTELHSLWQNEER 1760
WD40-rpts                                                                                      

Query     1761 AATVTKKTYEIWHRRHDYWLLAGIIFHGYARWQDVQNDPRFAILNEPFKGEMSRGNFLEIKNKFLARRFKLLEQALVIEE 1840
WD40-rpts                                                                                      

Query     1841 QLRRAAYLNMTEDPSHPSMALNTRFSEVECLAESHQHLSKESMSGNKPANAVLHKVLKQLEELLSDMKADVTRLPATIAR 1920
WD40-rpts                                                                                      

Query     1921 IPPVAVRLQMSERSILSRLASRGPEVTQTQAQR 1953
WD40-rpts

1 WD40-repeats found in QUERY=ENSDARP00000087334 (Len=1953):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15  1099-1155     2.92  235.25  0.04126       20.0%     30.26

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1099-1155   EGYKYERIDGGVTGGMRQEAIDRFNAPGAPQFVFLLSTRAGGLGINLATAD-TVIIYD

   WD40 Template    TGECLRTLSGHTS------------------GVTSVSFSPDGKRLVSGSEDGTIKVWD