Accession: ENSDARP00000087003 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSDARP00000087003 (Len=628)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000087003, Len=628):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDKSELKAELERKKQRLAQIREEKKRKEEERKKKELDGRKEGASPPQEDSDLERKRREAEALLQSMGITDASMVPPPMS 80  
WD40-rpts                                                                                      

Query       81 PSAKSVGTPSETGSQDSGDGGTGPRTLHWDSDPSTLLLHSDSQLGRGPLKLGMSKVTQVDFPPKEMVSYSKETQTPTQTH 160 
WD40-rpts                                                                                      

Query      161 HKEDEEEEEDLAVMQPVMEPQEEKDSQKEEDEASPHELTEEEKQQILHSEEFVTFFDHSSRIMERALSEQVDVFFDYSGR 240 
WD40-rpts                                                                                      

Query      241 DLQDKEGESQAGAKLSLNRQFADERWSKHRVVTCLDWSPQYPELLVASYCSNEEAPHEPDGVALVWNMKYKKTTPEYVFH 320 
WD40-rpts                           (____________________WD 1____________________)(____________

Query      321 CQSAVMSAAFAQFHPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLSASAHTHPVYCVNVVGTQNAHNLISISTDGKMCSW 400 
WD40-rpts      _______WD 2___________________)           (_________________WD 3________________

Query      401 SLDMLSTPQDSLELVFKQSKSVAVTSMSFPLGDVNNFVVGSEDGSVYTACRHGSKAGISEMFEGHHGPITGLDCHTAAGP 480 
WD40-rpts      )(______________________WD 4_____________________)     (____________________WD 5

Query      481 VDFSHLFVTSSFDWTVKLWGTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGVGHLDLWNLNNETEVPTASVTVEGN 560 
WD40-rpts      ___________________)   (_________________WD 6_________________)(________________

Query      561 PALNRVRWAHSGREVAVGDSEGQLHIYDVGEQISVPRQDEWTRFVRTLTEINENREDVEELAAQRLAA 628 
WD40-rpts      ____WD 7___________________)

7 WD40-repeats found in QUERY=ENSDARP00000087003 (Len=628):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   262-307      2.82  231.07  0.04684       27.5%     42.12
  WD 2:  Seg  5   308-351      3.87  274.65  0.01232       27.5%     40.60
  WD 3:  Seg 10   363-401      5.22  330.47  0.00219       30.0%     45.08
  WD 4:  Seg 13   402-450      3.22  247.74  0.02818       32.5%     48.83
  WD 5:  Seg 17   456-500      5.25  331.60  0.00211       22.5%     42.43
  WD 6:  Seg 20   504-543      4.80  313.12  0.00375       20.0%     52.49
  WD 7:  Seg 24   544-588      4.51  301.16  0.00543       12.5%     56.44

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  262-307    ADE-----------------RW---SKHRVVTCLDW--SP-QY------PEL-LVASYCSNEEAPHEPDGVALVWN
   WD 2  308-351    MKY-----K--------KTTPEYVFHCQSAVMSAAF--AQFHP------NLV-VGGT----------YSGQIVLWD
   WD 3  363-401    TP----------------LSAS---AHTHPVYCVNVVGTQ-NA------HNL-ISIS----------TDGKMCSWS
   WD 4  402-450    LDM-----LSTPQDSLELVFKQ---SKSVAVTSMSF--PLGDV------NNF-VVGS----------EDGSVYTAC
   WD 5  456-500    -AG-----I--------SEMFE---GHHGPITGLDC--HT-AAGPVDFSHLF-VTSS----------FDWTVKLWG
   WD 6  504-543    -NK-----P--------LYSFE---DNSDYVYDVMW--SP-TH------PALFACVD----------GVGHLDLWN
   WD 7  544-588    LNNETEVPT--------ASVTV---EGNPALNRVRW--AH-SG------REV-AVGD----------SEGQLHIYD

   WD40 Template    TGE-----C--------LRTLS---GHTSGVTSVSF--SP-DG------KRL-VSGS----------EDGTIKVWD