Input parameters:

  Query = ENSDARP00000086480 (Len=622)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000086480, Len=622):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATDVSSDGSENKRKLEEDEDEDNWVGPMPSEATQTKKKKVLEFERLYLDNLPSASMYERSYMHRDVITHIVCSKTDFIL 80  
WD40-rpts                                                        (__________________WD 1_______

Query       81 TASQDGHVKFWKKKEDEGVEFVKHFRSHLGVIECISVSAEGALLCSVGDDQAMKVFDVVNFDMINMLKLGFHPGQCEWIY 160 
WD40-rpts      ___________)      (_________________WD 2________________)                       

Query      161 NPGDAISTIACSEKSTGKIFVYDGRGSNQPLHVFEKMHTTPLSQIRLNPKYRVIVSADKAGMLEYWTGLPSEFKFPRQVD 240 
WD40-rpts                            (____________________WD 3___________________)         (___

Query      241 WEFKTDTDLYEFAKCGTYPTSLAFSQDGKKMATIAVDRKVRIFRFLTGKLMRVFDESLTMFTELQQMRQQLPDMEFGRRM 320 
WD40-rpts      __________________WD 4_____________________)                                    

Query      321 AVERELEKVDGIRLTNIIFDETGHFVLYGTMLGIKVINVETNRCVRILGKQENIRVVQLSLFQGVAKAMQAAPTIEMKAS 400 
WD40-rpts                                                                                      

Query      401 ENPALQSSDPDPTIFCTAFKKNRFYMFTKREPEDTKSADSDRDIFNEKPSKEEVMAATQAEGPKRVSDSAIIHTTMGDIH 480 
WD40-rpts                                                                                      

Query      481 IKLFPVECPKTVENFCVHSRNGYYNGHIFHRVIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAG 560 
WD40-rpts                                                                                      

Query      561 PGTNGSQFFITVVPTPWLDNKHTVFGRTSKGMEVVQRISNIKVNPKTDKPYEDISIINITVK 622 
WD40-rpts                                                                    

4 WD40-repeats found in QUERY=ENSDARP00000086480 (Len=622):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    51-92       3.60  263.22  0.01752       20.0%     35.91
  WD 2:  Seg  4    99-137      5.97  361.41  0.00084       27.5%     52.63
  WD 3:  Seg 12   183-227      3.53  260.55  0.01902       20.0%     34.75
  WD 4:  Seg 16   237-284      3.86  273.96  0.01259       22.5%     48.95

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   51-92     NLPSASMY-----ERSYMHRD---------VITHIVCSKTD-FILTASQDGHVKFWK
   WD 2   99-137    -VEFVKHF-----RS---HLG---------VIECISVSAEGALLCSVGDDQAMKVFD
   WD 3  183-227    DGRGSNQPLHVFEKM---HTT---------PLSQIRLNPKYRVIVSADKAGMLEYWT
   WD 4  237-284    -RQVDWEF-----KT---DTDLYEFAKCGTYPTSLAFSQDGKKMATIAVDRKVRIFR

   WD40 Template    TGECLRTL-----SG---HTS---------GVTSVSFSPDGKRLVSGSEDGTIKVWD