Accession: ENSDARP00000083528 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSDARP00000083528 (Len=375)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000083528, Len=375):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAKSQICSIWLGSETGILKGVSLRKKQAFNFCEMSCLSRDQEVCVMAWGDPYESELLLGSVNGTVKTFSTDKGIFTATK 80  
WD40-rpts      (_________WD 1________)(_____________________WD 2____________________)(_________

Query       81 ECGDPSQGKFTGLAVTDSSMITCVESGLLKVWKEGSTDTVEVNVGKDICKMRQNQSQRHHVATGGKENPLKVWDLEKPDK 160 
WD40-rpts      __________WD 3__________________)(__________________WD 4_________________)      

Query      161 PIFTAKNVAHDWLDMRVPVWVRDISFIADSDKIVTCTGHHKVRVYDPSTPQRRPVLEADFGEYPLTALSLPASQDAVVVG 240 
WD40-rpts          (__________________WD 5__________________)(___________________WD 6__________

Query      241 NTHGELAILDLRKGLVRGCFKGLAGAVRGLQCHPSLPLVASCGLDRFLRVHSLEDRSLQHKVYLKSRLNCVLLSSRDLES 320 
WD40-rpts      _________)   (_________________WD 7________________)                            

Query      321 SSDSGDVEEVKAEEEDEVWDNMETVTEKTKKRAAEKDEAAVTGADGKKKRKQVNK 375 
WD40-rpts

7 WD40-repeats found in QUERY=ENSDARP00000083528 (Len=375):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-23       2.87  233.33  0.04374       12.5%     21.59
  WD 2:  Seg  3    24-70       6.59  386.82  0.00038       20.0%     55.06
  WD 3:  Seg  7    71-113      6.50  383.16  0.00043       22.5%     50.45
  WD 4:  Seg 11   114-154      6.23  371.92  0.00060       15.0%     50.25
  WD 5:  Seg 16   165-206      6.73  392.50  0.00032       17.5%     39.73
  WD 6:  Seg 19   207-250      7.78  435.86  8.3e-05       15.0%     57.74
  WD 7:  Seg 23   254-292      8.43  463.08  3.6e-05       17.5%     58.84

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-23     ---------------------------------MAAKSQIC-SIWLGSETGILKGVS
   WD 2   24-70     LR----KKQAFNFC-EM--SCL---SRDQEVCVMAWGDPYESELLLGSVNGTVKTFS
   WD 3   71-113    TD----K------G-IF--TATKECGDPSQGKFTGLAVTDS-SMITCVESGLLKVWK
   WD 4  114-154    EG----S------TDTV--EVN---VGKDICKMRQNQSQRH-HVATGGKENPLKVWD
   WD 5  165-206    AK----N------V-AHDWLDM---RVPVWVRDISFIADSD-KIVTCTGHHKVRVYD
   WD 6  207-250    PSTPQRR------P-VL--EAD---FGEYPLTALSLPASQD-AVVVGNTHGELAILD
   WD 7  254-292    -G----L------V-RG--CFK---GLAGAVRGLQCHPSLP-LVASCGLDRFLRVHS

   WD40 Template    TG----E------C-LR--TLS---GHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD