Input parameters:

  Query = ENSDARP00000080965 (Len=841)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000080965, Len=841):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MARIGDIIHLNVGGKRFSTSRQTLTWVPDSFFSSLLSGRISTLKDETGAIFIDRDPSLFAPILNFLRTKELHPRSIDVHL 80  
WD40-rpts                                                                                      

Query       81 LIHEAEFYGITPLVRKLQLCDELDRSSCGNVLFNGYLPPPVYPVKRRNRHSVAGPQFMGGRSGPVERAPVRRSNTMPPNL 160 
WD40-rpts                                                                                      

Query      161 GNAGILGRAAVEERVPGPVSDPGLVRIICGHHNWIAVAYAQFVVCYRVKESTGWQQVFTSPRLDWVIDRVALNAKVMGGS 240 
WD40-rpts                                                                                      

Query      241 LGDNDKMVAVASGTEIILWAICPDGNGNEIGVFSLNVPVEALFFVGNQLIATSHTGKVGVWNAVTKHWQNQDVVPINSYD 320 
WD40-rpts                             (_________________WD 1________________)                  

Query      321 TAGSFLILGCNNGSIYYIDVQKFPLRMKDNDLLVTELYRDPSEDAITALSVYLTPKTSDSGNWIEIAYGTSSGTVRVIVQ 400 
WD40-rpts                                                                                      

Query      401 HPETVGSGPQLFQTFSVHRSPVTKIMLSEKHLISVCADNNHVRTWTVTRFRGMISTQPGSTPLTSFKILSLDDIDGHAGC 480 
WD40-rpts      (____________________WD 2____________________)                                  

Query      481 AAGTEIGPYGERDEQQVFIQRVVPDTDKLYVRLSSNGKRVCEVRSVDGTSITAFVVHECEGSSRIGSRPRRYLFSGHSNG 560 
WD40-rpts                                                     (_____________________WD 3_______

Query      561 SIQMWDLTTAMEIAGKVDIKALGGPTEEELLELLDQCDLTLTRTPDMSPAASLTHSSRNSTCSLQSQMSESSRAASGFRS 640 
WD40-rpts      _____________)                                                                  

Query      641 AVPLSGSLPRQPPLVPLTNKPRDLPSHLGLSQSSIPSSSGSSPHPGREKERDALRDGLLSIRRGSFVERCQERAKCSDAT 720 
WD40-rpts                                                                                      

Query      721 AGLDPSRRSLAVCNELEARLGLSSSLRMPSSFSALPAGCLSPPSSSSSSLSSASVRRAAPAPVSPAPPSLSPTRSQTPAS 800 
WD40-rpts                                                                                      

Query      801 ARRPISSPTNDSPANDSTPAPESPASPPATSPKPHMNETSF 841 
WD40-rpts                                               

3 WD40-repeats found in QUERY=ENSDARP00000080965 (Len=841):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   264-302      3.04  240.42  0.03524       17.5%     27.87
  WD 2:  Seg 21   401-446      2.89  234.07  0.04277       32.5%     41.05
  WD 3:  Seg 28   528-574      3.14  244.53  0.03109       27.5%     23.49

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  264-302    -DGNG-------NEIGVFSLNVPVEALFFVGNQLIATSHTGK-VGVWN--------
   WD 2  401-446    HPETVGSGPQLFQTFSVHRSPVTKIMLS--EKHLISVCADNNHVRTWT--------
   WD 3  528-574    -GTSI-------TAFVVHECEGSSRIGSRPRRYLFSGHSNGS-IQMWDLTTAMEIA

   WD40 Template    TGECL-------RTLSGHTSGVTSVSFSPDGKRLVSGSEDGT-IKVWD--------