Accession: ENSDARP00000080844 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSDARP00000080844 (Len=627)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000080844, Len=627):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADRSDLKAELERKKQRLAQIREEKKRKEEERKKKESEMLQRPENVTEDSDLDRKRRETEALLQSIGISPEPPLVPTPMS 80  
WD40-rpts                                                                                      

Query       81 PSSQSVSPPSETGSQESIDGGTVERTLQWDTDPSALQLLADSVHGCRMQRLGASKIVQIDFMPKELVTYSKETQTPVASN 160 
WD40-rpts                                                                                      

Query      161 QPEEEDDEELSVPKSEPASQQLEEEKTQEVEEVHPRELTNEEKEQIVHSEDFLFFFDRSIRVVERVLAEDKDIFFDYSGR 240 
WD40-rpts                                                                                      

Query      241 DMEDKEGDLQAGSNLSFNRHFYDEHWSKHRVVTSLDWSPQYPELLVASYNTNEDAPHEPDGVVLVWNMKFKKATPEYIFH 320 
WD40-rpts                           (____________________WD 1____________________)(____________

Query      321 CQSSVMSVGFAQFHPNLVIGGTYSGQIAMWDNRSHRRTPVQRTPLSATAHTHPVYCVNVVGTQNANNLITVSTDGKMCSW 400 
WD40-rpts      _______WD 2___________________)           (_________________WD 3________________

Query      401 SLDMLSQPQESMELIYNKSKPVAVTCMAFPASDVNNYVVGSEEGTVYTASRHGSKAGIGEIFDGHQGPVTGISCHNAVGP 480 
WD40-rpts      )(______________________WD 4_____________________)     (____________________WD 5

Query      481 VDFSHLFTTSSFDWTVKLWSTKHNKPLYSFEDNADYVYDVMWSPVHPALFATVDGNGRLDLWNLNNYTEVPSASVSVEGG 560 
WD40-rpts      ___________________)   (_________________WD 6_________________)(________________

Query      561 CALNRVRWASGGREVAVGDSEGRVWIYDVGELAVPHTDDWSKFGRTLMEIQANRGDGEEEGALELPA 627 
WD40-rpts      ____WD 7___________________)

7 WD40-repeats found in QUERY=ENSDARP00000080844 (Len=627):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   262-307      2.78  229.42  0.04924       30.0%     44.29
  WD 2:  Seg  6   308-351      3.99  279.64  0.01056       27.5%     45.85
  WD 3:  Seg 11   363-401      5.16  327.80  0.00238       25.0%     44.13
  WD 4:  Seg 14   402-450      2.97  237.33  0.03872       27.5%     49.47
  WD 5:  Seg 18   456-500      5.16  327.81  0.00238       25.0%     41.96
  WD 6:  Seg 21   504-543      4.71  309.08  0.00425       20.0%     50.11
  WD 7:  Seg 25   544-588      4.39  296.15  0.00634       12.5%     55.95

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  262-307    YDE--------------------HWSKHRVVTSLDW--SP------QYPEL-LVASYNTNEDAPHEPDGVVLVWN
   WD 2  308-351    MKF-----K--------KATPEYIFHCQSSVMSVGF--AQ-----FHPNLV-IGGT----------YSGQIAMWD
   WD 3  363-401    TP----------------LS---ATAHTHPVYCVNVVGTQ------NANNL-ITVS----------TDGKMCSWS
   WD 4  402-450    LDM-----LSQPQESMELIY---NKSKPVAVTCMAF--PA-----SDVNNY-VVGS----------EEGTVYTAS
   WD 5  456-500    -AG-----I--------GEI---FDGHQGPVTGISC--HNAVGPVDFSHLF-TTSS----------FDWTVKLWS
   WD 6  504-543    -NK-----P--------LYS---FEDNADYVYDVMW--SP------VHPALFATVD----------GNGRLDLWN
   WD 7  544-588    LNNYTEVPS--------ASV---SVEGGCALNRVRW--AS------GGREV-AVGD----------SEGRVWIYD

   WD40 Template    TGE-----C--------LRT---LSGHTSGVTSVSF--SP------DGKRL-VSGS----------EDGTIKVWD