Input parameters:

  Query = ENSDARP00000079285 (Len=1478)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000079285, Len=1478):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNQSCLTSRAKKANNNSTSVPANTRRKTRQSHRRDIHNRVVLEKVLGITASSSSALTCDPNTGLVAYPAGCVIVILSPKK 80  
WD40-rpts                                                                                      

Query       81 NKQTHIFNTSRKTFSALAFSQNGKYLVTGESGHMPCVRVWDVAERTQVAEVQCHKYGVSCVAFSPNGSYIVSVGYQHDRT 160 
WD40-rpts      (__________________WD 1_________________)   (__________________WD 2_____________

Query      161 VSVWEWKKGTVIASNKVSSRVLGVSFSEDNSYFVTAGNRHVKFWYLDASKERRVNSTVPLIGRSGLLGEHQNSQFCGLAC 240 
WD40-rpts      ____)(_________________WD 3_________________)         (________________WD 4_____

Query      241 GRGSMASSTYCITHTGLLCQFNSNRQLDSWTTSAQCLSVSGTFVFCGCADGTVRVFSPQDLRYITTLHRPHCLGVDVSQG 320 
WD40-rpts      __________)   (___________________WD 5__________________)          (____________

Query      321 TQPGHLFSANPEAQYPDTLALTFDPVTKHLTCVYNDHSVYVWDVRDIRNVGKVYSALYHSGCVWSVETYPELEDPSAACL 400 
WD40-rpts      _____________WD 6_________________________)(_________________________WD 7_______

Query      401 SPGSFLTCSSDNTIRLWRSESPQSHSAALGLRHNLYSQDIVRIVYVDDDTQYLKAEAEKAEGGAGQDGKSGIRVLGISPD 480 
WD40-rpts      _________________)(________________WD 8________________)(__________________WD 9_

Query      481 GQHLAAGDRSGNLRIFGLQFMDELQKIEAHDSEVLCLAFSPAETGLHLLASASRDRLIHIFDMDSKCNLVQTVYDHSASI 560 
WD40-rpts      ________________)   (__________________WD10__________________)(_________________

Query      561 TAVKFTGLNSELCMVSCGADKSVYFRSAEKTSDGLVFSRSHHIVEKTTLYDMDLDATRTHTAIACQDRNIRVYNVKSGKM 640 
WD40-rpts      ___WD11___________________)(_____________________WD12____________________)   (__

Query      641 KKCFKGSMNDDGTLLKVQLDPSGMFLATSCSDKNICVFDYESGECVATLFGHSEIVTGMKFSQDCRHLITVSGDSCVFVW 720 
WD40-rpts      ________________WD13__________________)   (_________________WD14________________

Query      721 RLDSQMTNSMRKRLAERKQQAGLRLQRAPTKQEVIRRETYITVPCNALTHMEEDGLMAEVNPEDGLEDCRTPDRLDSTDA 800 
WD40-rpts      )                                                                               

Query      801 SLDSVVLQTNGKMPMWVRRLGGEGEKDGTGAANRVQYQPQGRWAVQSDPLAIRTVLEMKSNQLPLSHTPSRVMGEEELEE 880 
WD40-rpts                        (_________________WD15________________)                       

Query      881 DPRFHPQSLDSLLDEDLEDGEEEEEEKICGVSSDGFSSSLHGPEFLQFPHGEENFNPELSSSEKTGYILYPANSTALSTG 960 
WD40-rpts                                                                                      

Query      961 EGEFDVKALCEGTAGDPDEEELSPDSACSAESPESHSDQPHDQDTDSLSQVSSTGSSGVEEDEEESGTLLRQHFDTLGVA 1040
WD40-rpts                                                                                      

Query     1041 TNEKFNTDLSSLQPTTESNFLNPRLSISTRFLSRFQSRFRSAACRPAACLSSIPDESTDSQTLDQTMEKPKHLSNSGSVE 1120
WD40-rpts                                                                                      

Query     1121 EKEKTEITNKNQSTTQSTTSAPGVLSNKSTSNSCDASVTRSRQSYMGPTASSRAKINQSNSVESLNLCISEETPLNALPN 1200
WD40-rpts                                                                                      

Query     1201 VEHSKENMIPPSSPVVSSAPLHQSPVLGNHSARASLRLDLIGHNRASLSPVSLKSRRGKVEHHDSPRRQALVTPTEMRSL 1280
WD40-rpts                                                                                      

Query     1281 GKESRKQISNIEQSLAPSDRLSTGAGMFSRSPMVRQTSDTVFEDLQSVRSDQTSVSSPMTNAVSQDNQDSADNNSIPEET 1360
WD40-rpts                                                                                      

Query     1361 GLSAEALSVQMCKEMVNELWHTIHKATDLYSKLCSIPELSEQQEQMKGVLQEVFVGVQSELNSICPQKTQPSTKSTRPIS 1440
WD40-rpts                                                                                      

Query     1441 EDSPGRQLRDDRAVALLEKYSEMLLLRMTEKGAQATLE 1478
WD40-rpts                                            

15 WD40-repeats found in QUERY=ENSDARP00000079285 (Len=1478):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    81-121      6.43  380.45  0.00046       25.0%     56.92
  WD 2:  Seg  9   125-165      7.72  433.45  9.0e-05       35.0%     57.74
  WD 3:  Seg 13   166-205      5.19  328.87  0.00230       25.0%     54.89
  WD 4:  Seg 18   215-251      3.16  245.08  0.03057       15.0%     31.09
  WD 5:  Seg 21   255-297      5.05  323.42  0.00272       20.0%     56.65
  WD 6:  Seg 26   308-363      5.12  326.20  0.00250       20.0%     43.16
  WD 7:  Seg 29   364-418      5.35  335.84  0.00185       25.0%     54.14
  WD 8:  Seg 33   419-456      3.47  257.97  0.02059       15.0%     36.62
  WD 9:  Seg 37   457-497      7.28  415.42  0.00016       22.5%     48.29
  WD10:  Seg 40   501-542      6.90  399.67  0.00026       32.5%     55.95
  WD11:  Seg 44   543-587      6.24  372.51  0.00059       22.5%     53.75
  WD12:  Seg 48   588-634      4.85  314.84  0.00355       10.0%     46.69
  WD13:  Seg 52   638-679      6.43  380.24  0.00047       25.0%     57.09
  WD14:  Seg 56   683-721      9.43  504.11  1.0e-05       42.5%     59.41
  WD15:  Seg 67   819-857      4.61  305.16  0.00480       15.0%     32.99

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   81-121    -N---K----------------Q-----T-HIFN-------TSRK----TFSALAFSQNG---K----------YL--VTGE--SGHMPCVRVWD
   WD 2  125-165    -R---T----------------Q-----V-AEVQ-------CHKY----GVSCVAFSPNG---S----------YI--VSVGYQHD--RTVSVWE
   WD 3  166-205    WK---K---------------GT-----V-IASN-------KVSS----RVLGVSFSEDN---S----------YF--VTAG---N--RHVKFWY
   WD 4  215-251    NS---T----------------V--------PLI-------GR-S----GLLGEHQNSQF---C----------GL--ACGR--GS--MASSTYC
   WD 5  255-297    -T---G----------------L-----L-CQFN-------SNRQLDSWTTSAQCLSVSG---T----------FV--FCGC--AD--GTVRVFS
   WD 6  308-363    HR---PHCLGVDVSQGTQPGHLF-----S-ANPE-------AQYP----DTLALTFDPVT---K----------HL--TCVY--ND--HSVYVWD
   WD 7  364-418    VR---D----------------IRNVGKV-YSAL-------YHSG----CVWSVETYPEL---EDPSAACLSPGSF--LTCS--SD--NTIRLWR
   WD 8  419-456    SE---S------------------------PQSH-------SAAL----GLRHNLYSQDI---V----------RI--VYVD--DD--TQYLKAE
   WD 9  457-497    AE---K----------------A-----EGGAGQ-------DGKS----GIRVLGISPDG---Q----------HL--AAGD--RS--GNLRIFG
   WD10  501-542    -M---D----------------E-----L-QKIE-------AHDS----EVLCLAFSPAETGLH----------LL--ASAS--RD--RLIHIFD
   WD11  543-587    MDSKCN----------------L-----V-QTVY-------DHSA----SITAVKFTGLN---S----------ELCMVSCG--AD--KSVYFRS
   WD12  588-634    AE---K----------------T-----S-DGLVFSRSHHIVEKT----TLYDMDLDATR---T----------HT--AIAC--QD--RNIRVYN
   WD13  638-679    -G---K----------------M-----K-KCFK-------GSMN-DDGTLLKVQLDPSG---M----------FL--ATSC--SD--KNICVFD
   WD14  683-721    -G---E----------------C-----V-ATLF-------GHSE----IVTGMKFSQDC---R----------HL--ITVS--GD--SCVFVWR
   WD15  819-857    RL---G----------------G-------EGEK-------DGTG----AANRVQYQPQG---R----------WA--VQSD--PL--AIRTVLE

   WD40 Template    TG---E----------------C-----L-RTLS-------GHTS----GVTSVSFSPDG---K----------RL--VSGS--ED--GTIKVWD