Input parameters:

  Query = ENSDARP00000079110 (Len=904)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000079110, Len=904):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASDTSDTEEFYDAAEDVNFTPSPHASPAKFELPQPGGPTESVVQEVAAGLAQPEPRHDDSLQIIDSIIEESQKSGVEEE 80  
WD40-rpts                                                                                      

Query       81 LLRTEDTCEASSEGEKPEAEDCSVEETPAPEVLVVVLPEDPDVTPRDSGCTEQVPDVRPREVRPQDIHDIAPDVAGSAQV 160 
WD40-rpts                                                                                      

Query      161 GQDQGIPPPPDITSALGQPSLPVSLPCAETADILEQVSTSDGDGPGPSKPPRQFTVEPDIVASTKKQPPSRPPPPSGAPP 240 
WD40-rpts                                                                                      

Query      241 PRPPPPSRPSFSASKKSQEAIRPTGLEVSIEPAEELCGLVSPNATVRCITKEVQHSLDLASATSGDKVVTAQENDEQASS 320 
WD40-rpts                                                                                (_____

Query      321 PSGAETAGPQRPRSNSGRELTDEEILASVMIKNLDTGEEIPLIQAEEKLPTGINPLTLHIMRRTKEYISNDAAQSDDDDK 400 
WD40-rpts      ____________WD 1________________)                                               

Query      401 SQPALTDTDGGKLKQRTTQLKKFLGKSVKRAKHLAEEYGERAVNKVKSVRDEVFHNDQDDPSSSDDEGMPYTRPVKFKAA 480 
WD40-rpts               (_________________WD 2________________)                                

Query      481 HSFKGPFDFDQIKVVQDLSGEHMGAVWTMKFSHCGRLLATAGQDNIVRIWVLKNAYDYFNNMRIKYNTEGRVSPSPSQES 560 
WD40-rpts                 (_________________WD 3_________________)(___________________WD 4_____

Query      561 LCSSKSDTEGGFGAAVEDADTEDRNVPFRQVPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHI 640 
WD40-rpts      _____________)               (________________WD 5________________)(____________

Query      641 DFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTRLITAANFCQNGKYAVIGTYDGRCIFYDTERLKYH 720 
WD40-rpts      ______WD 6__________________)(___________________WD 7___________________)(______

Query      721 TQIHVRSTRGRNRVGRKITGIEPLPGENKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDYSYIVSGSED 800 
WD40-rpts      ________________WD 8______________________)   (__________________WD 9___________

Query      801 KYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPHPDLIVPQEAGSEKPDSDCKSDSTDDSETIPSGALKT 880 
WD40-rpts      ______)               (_________________WD10________________)________________WD1

Query      881 DHSEVLLSADFTGAIKVFVNVKKY 904 
WD40-rpts      1_________________)     

11 WD40-repeats found in QUERY=ENSDARP00000079110 (Len=904):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   315-353      6.35  377.12  0.00051       15.0%      8.29
  WD 2:  Seg  7   410-448      3.63  264.46  0.01687       15.0%     30.38
  WD 3:  Seg 10   492-531      7.70  432.64  9.2e-05       27.5%     53.96
  WD 4:  Seg 14   532-574      6.28  374.25  0.00056       17.5%     27.15
  WD 5:  Seg 16   590-627      6.43  380.16  0.00047       27.5%     48.07
  WD 6:  Seg 20   628-669      7.19  411.69  0.00018       30.0%     55.14
  WD 7:  Seg 24   670-713      7.98  444.18  6.4e-05       27.5%     53.95
  WD 8:  Seg 28   714-763      6.18  370.04  0.00064       22.5%     55.57
  WD 9:  Seg 32   767-807      7.39  419.98  0.00014       30.0%     55.95
  WD10:  Seg 36   823-861      7.07  406.50  0.00021       20.0%     33.74
  WD11:  Seg 38   860-899      4.00  279.81  0.01051       22.5%     32.30

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  315-353    -D---E----Q-------ASSPSG-AET---AGP--QRPRSN-S-GRELTDEEILASVMIKN
   WD 2  410-448    -G---G----K-------LKQRTT-QLK---KFL--GKSVKR-A-KHLAEEYGERAVNKVKS
   WD 3  492-531    -I---K----V-------VQDLSGEHMG---AVW--TMKFSH-C-GRLLATAGQDNIVRIWV
   WD 4  532-574    LKNAYD----Y-------FNNMRI-KYN---TEG--RVSPSP-S-QESLCSSKSDTEGGFGA
   WD 5  590-627    -Q---V----P-------FCKYKG-HTA---DLL--DLSWSK-N-Y-FLLSSSMDKTVRLWH
   WD 6  628-669    IS---R---RE-------CLCCFQ-HID---FVT--AIAFHPRD-DRYFLSGSLDGKLRLWN
   WD 7  670-713    IP---DKKVAL-------WNEVDG-QTR---LIT--AANFCQ-N-GKYAVIGTYDGRCIFYD
   WD 8  714-763    TE---R----LKYHTQIHVRSTRG-RNRVGRKIT--GIEPLP-G-ENKILVTSNDSRIRLYD
   WD 9  767-807    -L---S----L-------SMKYKG-YVN---SSSQIKASFSH-D-YSYIVSGSEDKYVYIWS
   WD10  823-861    -N---D----F-------WEGIKA-HNA---VVT--SAIFAP-H-PDLIVPQEAGSEKPDSD
   WD11  860-899    -S---D----C-------KSDSTD-DSE---TIP--SGALKT-DHSEVLLSADFTGAIKVFV

   WD40 Template    TG---E----C-------LRTLSG-HTS---GVT--SVSFSP-D-GKRLVSGSEDGTIKVWD