Input parameters:

  Query = ENSDARP00000079014 (Len=639)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000079014, Len=639):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDAGFGSTFPAVPQVAKAETNYKQHRRTPSTSSTLTYSTRDDDDGMPPISTPRRSDSAISVRSLHSESNMSLRSTFSLHE 80  
WD40-rpts                                                                                      

Query       81 EEEDTEPQVFAEQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCALTSEKCPVDNSKLTVVVNNIAVAEQIGELFIHCKYG 160 
WD40-rpts                                                                                      

Query      161 CRPAASGKSGAYEVDPLGCPFTIKLSTRKDHEVSCDYRPVRCPNNPNCPPLLTMNLEAHLKECEHIKCPHSKYGCTFIGN 240 
WD40-rpts                                                                                      

Query      241 QDTYETHLEVCKFEGLKEFLQQTDDRFHEMQVTLAQKDQDISFLRSMLGKLSEKLDQLEKNLELKFDVLDENQSKLSEDL 320 
WD40-rpts                                                                                      

Query      321 MEFRRDASMLNDELSHINARLNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCVYSTGDLLFSGSSDKSIKVWDTCTTYKC 400 
WD40-rpts           (_______________________________WD 1_______________________________)    (__

Query      401 QKTLEGHDGIVLALCIQGNKLYSGSADCTIIVWDIQTLQKVNTIRAHDNPVCTLVSSHNMLFSGSLKAIKVWDIVGTELK 480 
WD40-rpts      ______________WD 2_______________)   (_______________WD 3_______________)     (_

Query      481 LKKELTGLNHWVRALVASQNHLYSGSYQTIKIWDIRSLECVHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQ 560 
WD40-rpts      ______________WD 4_______________)   (________________WD 5_______________)   (__

Query      561 VRTLTGHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSGAVDSTVKVWTC 639 
WD40-rpts      ________________WD 6_________________)   (________________WD 7_______________) 

7 WD40-repeats found in QUERY=ENSDARP00000079014 (Len=639):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   326-393      7.97  443.90  6.5e-05       40.0%     51.54
  WD 2:  Seg 17   398-434      8.00  445.01  6.3e-05       42.5%     46.82
  WD 3:  Seg 21   438-473      5.43  339.03  0.00168       32.5%     48.08
  WD 4:  Seg 25   479-514      5.26  331.74  0.00210       32.5%     43.35
  WD 5:  Seg 29   518-554      6.45  381.20  0.00045       27.5%     51.31
  WD 6:  Seg 33   558-598      8.28  456.58  4.4e-05       35.0%     56.19
  WD 7:  Seg 37   602-638      7.78  436.14  8.2e-05       40.0%     51.49

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  326-393    DASMLNDELSHINARLNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCV--YSTGDLLFSGSSDKSIKVWD
   WD 2  398-434    -Y----------------------------KCQKTLEGHDGIV--LAL--CIQGNKLYSGSADCTIIVWD
   WD 3  438-473    -L----------------------------QKVNTIRAHDNPVCTLVS--SHN--MLFSGS-LKAIKVWD
   WD 4  479-514    -L----------------------------KLKKELTGLNHWVRALVA--SQNH--LYSGS-YQTIKIWD
   WD 5  518-554    -L----------------------------ECVHVLQTSGGSVYSIAV--T--NHHIVCGTYENLIHVWD
   WD 6  558-598    -K----------------------------EQVRTLTGHVGTVYALAVISTPDQTKVFSASYDRSLRVWS
   WD 7  602-638    -M----------------------------ICTQTLLRHQGSVTALAV--SRG--RLFSGAVDSTVKVWT

   WD40 Template    TG----------------------------ECLRTLSGHTSGVTSVSF--SPDGKRLVSGSEDGTIKVWD