Input parameters:

  Query = ENSDARP00000078965 (Len=491)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000078965, Len=491):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTVTKMSWRPTYRSSKFRNVYGKVANREHCFEGIPITKNVHDNHFCAVNAKFLAIVTESAGGGSFVVIPVTQFGRIDPHY 80  
WD40-rpts                                      (________________WD 1________________)      (___

Query       81 PKVCGHQGNVLDIKWNPFHDNIIASCSEDSSVRIWEIPDGGLRRSLTESVLELYGHSRRVGLIEWHPTTSGILFSAGYDY 160 
WD40-rpts      ______________WD 2_________________)          (_________________WD 3____________

Query      161 KILIWNLEIGEPVKMIDCHSDVILCMSFNTEGSLLATSCKDKKLRVIEPRSGRVLQEANFKNHKVNRVVFLGNIKRLLTT 240 
WD40-rpts      _____)   (_________________WD 4________________)   (___________________WD 5_____

Query      241 GVSRWNTRQIALWDQEDLSMPIIEEEIDGLSGLLFPFYDADTHMLYLAGKGDGNIRYYEVTLDKPYLQYLMEFRSPAPQK 320 
WD40-rpts      _____________)      (_________________WD 6________________) (__________________W

Query      321 GLGVMPKHGLDVGACEVFRFYKLVTLKGLIEPISMIVPRRSETYQEDIYPMTPGTEPALSADEWLSGINRGPVLMSLKEG 400 
WD40-rpts      D 7__________________)                                                          

Query      401 YNRPNKLVFKAPVKEKKGGVVNGIDLLENVPPRTENELLRMFFRQQEELRRLKDELTQKDIKIRQLELELNNIRNSPNIN 480 
WD40-rpts                                                                                      

Query      481 NNNNNSNGSSI 491 
WD40-rpts                 

7 WD40-repeats found in QUERY=ENSDARP00000078965 (Len=491):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    33-70       3.40  255.20  0.02242       10.0%     36.06
  WD 2:  Seg  7    77-116      7.19  411.79  0.00018       22.5%     45.62
  WD 3:  Seg 11   127-166      6.34  376.56  0.00052       27.5%     53.62
  WD 4:  Seg 15   170-208      8.57  468.84  3.0e-05       22.5%     55.65
  WD 5:  Seg 19   212-254      5.34  335.30  0.00188       32.5%     43.91
  WD 6:  Seg 23   261-299      5.31  333.85  0.00197       12.5%     54.56
  WD 7:  Seg 27   301-342      4.02  280.87  0.01017       12.5%     39.94

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-70     GIP--I--TKNVHDNHFCAVNAKF-LAI-VT----ESAGGGSFVVIPV
   WD 2   77-116    -DP--HYPKVCGHQGNVLDIKWNPFHDN-II----ASCSEDSSVRIWE
   WD 3  127-166    -TE--SVLELYGHSRRVGLIEWHP-TTSGIL----FSAGYDYKILIWN
   WD 4  170-208    -GE--PVKMIDCHSDVILCMSFNT-EGS-LL----ATSCKDKKLRVIE
   WD 5  212-254    -GR--VLQEANFKNHKVNRVVFLG-NIK-RLLTTGVSRWNTRQIALWD
   WD 6  261-299    -PI--IEEEIDGLSGLLFPFYDAD-THM-LY----LAGKGDGNIRYYE
   WD 7  301-342    TLDKPYLQYLMEFRSPAPQKGLGV-MPK-HG----LDVGACEVFRFYK

   WD40 Template    TGE--CLRTLSGHTSGVTSVSFSP-DGK-RL----VSGSEDGTIKVWD